Variant report

Variant	rs2476504
Chromosome Location	chr11:34531410-34531411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1001179	1.00[JPT][hapmap]
rs11032654	1.00[JPT][hapmap]
rs11032719	1.00[JPT][hapmap]
rs11032722	1.00[JPT][hapmap]
rs11032723	1.00[JPT][hapmap]
rs11032724	1.00[JPT][hapmap]
rs11604331	1.00[JPT][hapmap]
rs12797274	1.00[JPT][hapmap]
rs12797675	1.00[JPT][hapmap]
rs17269931	1.00[JPT][hapmap]
rs2231825	1.00[JPT][hapmap]
rs2231828	1.00[JPT][hapmap]
rs494024	1.00[JPT][hapmap]
rs499406	1.00[JPT][hapmap]
rs511895	1.00[JPT][hapmap]
rs524167	1.00[JPT][hapmap]
rs533425	1.00[JPT][hapmap]
rs554518	1.00[LWK][hapmap]
rs560807	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv897211	chr11:34514941-34609541	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv897212	chr11:34523173-34621004	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2476504	EIF3M	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34518400-34534800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:34523800-34536800	Weak transcription	Right Atrium	heart
3	chr11:34530000-34532400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:34530200-34531600	Enhancers	Fetal Lung	lung
5	chr11:34530200-34532400	Enhancers	HepG2	liver
6	chr11:34530800-34531600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr11:34530800-34531800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:34531000-34532200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:34531200-34531800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:34531200-34534400	Weak transcription	Placenta	Placenta
11	chr11:34531200-34535000	Weak transcription	Pancreas	Pancrea
12	chr11:34531200-34535000	Weak transcription	Spleen	Spleen
13	chr11:34531400-34535200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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