Variant report

Variant	rs2477285
Chromosome Location	chr10:26964117-26964118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10764634	0.81[EUR][1000 genomes]
rs1613801	0.81[EUR][1000 genomes]
rs1616471	0.82[EUR][1000 genomes]
rs1677711	0.84[EUR][1000 genomes]
rs1677713	0.86[EUR][1000 genomes]
rs1677714	0.86[EUR][1000 genomes]
rs1677715	0.87[EUR][1000 genomes]
rs1677727	0.82[EUR][1000 genomes]
rs1677731	0.86[EUR][1000 genomes]
rs1677732	0.83[EUR][1000 genomes]
rs1677733	0.84[EUR][1000 genomes]
rs1677734	0.84[EUR][1000 genomes]
rs1677735	0.86[EUR][1000 genomes]
rs1677736	0.83[EUR][1000 genomes]
rs1677738	0.85[EUR][1000 genomes]
rs1677739	0.84[EUR][1000 genomes]
rs1748340	0.85[EUR][1000 genomes]
rs1748341	0.85[EUR][1000 genomes]
rs1748342	0.85[EUR][1000 genomes]
rs1748343	0.85[EUR][1000 genomes]
rs1748344	0.85[EUR][1000 genomes]
rs1748345	0.85[EUR][1000 genomes]
rs1748346	0.84[EUR][1000 genomes]
rs1748347	0.86[EUR][1000 genomes]
rs1748348	0.84[EUR][1000 genomes]
rs1748349	0.83[EUR][1000 genomes]
rs1748350	0.82[EUR][1000 genomes]
rs1748351	0.82[EUR][1000 genomes]
rs1780170	0.84[EUR][1000 genomes]
rs1780171	0.84[EUR][1000 genomes]
rs1780172	0.84[EUR][1000 genomes]
rs1780173	0.84[EUR][1000 genomes]
rs1780175	0.83[EUR][1000 genomes]
rs1780178	0.86[EUR][1000 genomes]
rs1780187	0.81[EUR][1000 genomes]
rs1780188	0.82[EUR][1000 genomes]
rs1809358	0.83[EUR][1000 genomes]
rs1812155	0.83[EUR][1000 genomes]
rs1871299	0.82[EUR][1000 genomes]
rs1871300	0.84[EUR][1000 genomes]
rs1947788	0.83[EUR][1000 genomes]
rs2005118	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2005119	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2005253	0.84[EUR][1000 genomes]
rs2011849	0.83[EUR][1000 genomes]
rs2011860	0.83[EUR][1000 genomes]
rs2224898	0.83[EUR][1000 genomes]
rs2251814	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2448109	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2448110	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2448112	0.82[EUR][1000 genomes]
rs2448113	0.83[EUR][1000 genomes]
rs2448114	0.83[EUR][1000 genomes]
rs2448115	0.82[EUR][1000 genomes]
rs2448116	0.83[EUR][1000 genomes]
rs2448119	0.84[EUR][1000 genomes]
rs2448120	0.83[EUR][1000 genomes]
rs2448121	0.83[EUR][1000 genomes]
rs2448122	0.85[EUR][1000 genomes]
rs2448123	0.82[EUR][1000 genomes]
rs2448124	0.81[EUR][1000 genomes]
rs2448125	0.83[EUR][1000 genomes]
rs2448128	0.84[EUR][1000 genomes]
rs2448129	0.83[EUR][1000 genomes]
rs2448131	0.84[EUR][1000 genomes]
rs2477282	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2477283	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2477284	0.82[ASN][1000 genomes]
rs2477286	0.84[EUR][1000 genomes]
rs2477288	0.83[EUR][1000 genomes]
rs2477289	0.84[EUR][1000 genomes]
rs2477290	0.84[EUR][1000 genomes]
rs2477291	0.83[EUR][1000 genomes]
rs2477293	0.83[EUR][1000 genomes]
rs2489558	0.86[EUR][1000 genomes]
rs2489584	0.83[EUR][1000 genomes]
rs2489585	0.82[EUR][1000 genomes]
rs2489586	0.84[EUR][1000 genomes]
rs2489587	0.84[EUR][1000 genomes]
rs2489588	0.84[EUR][1000 genomes]
rs2489590	0.84[EUR][1000 genomes]
rs2489591	0.83[EUR][1000 genomes]
rs2489592	0.83[EUR][1000 genomes]
rs2489593	0.83[EUR][1000 genomes]
rs2489594	0.82[EUR][1000 genomes]
rs2489595	0.81[EUR][1000 genomes]
rs2489596	0.85[EUR][1000 genomes]
rs2489597	0.83[EUR][1000 genomes]
rs2489600	0.84[EUR][1000 genomes]
rs2489601	0.84[EUR][1000 genomes]
rs2489602	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2489603	0.92[EUR][1000 genomes]
rs2860415	0.91[EUR][1000 genomes]
rs3101794	0.83[EUR][1000 genomes]
rs3118159	0.85[EUR][1000 genomes]
rs3118160	0.84[EUR][1000 genomes]
rs3121616	0.85[EUR][1000 genomes]
rs3121618	0.83[EUR][1000 genomes]
rs4749176	0.83[EUR][1000 genomes]
rs7905832	0.90[EUR][1000 genomes]
rs7910625	0.83[EUR][1000 genomes]
rs7914153	0.84[EUR][1000 genomes]
rs899374	0.84[EUR][1000 genomes]
rs9417486	0.80[EUR][1000 genomes]
rs9418574	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3436664	chr10:26860755-26969397	Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1041766	chr10:26890945-26969381	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1046911	chr10:26894348-26969381	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1044057	chr10:26894348-26971879	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv516275	chr10:26896432-26968171	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3333006	chr10:26908323-26985227	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3353004	chr10:26912762-26966282	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2477285	PDSS1	cis	Whole Blood	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26963200-26965200	Active TSS	K562	blood
2	chr10:26963400-26969400	Weak transcription	Thymus	Thymus

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