Variant report

Variant	rs2477342
Chromosome Location	chr10:27798252-27798253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27792936..27797096-chr10:27798053..27803515,8	K562	blood:
2	chr10:27793040..27797824-chr10:27798182..27803783,7	K562	blood:
3	chr10:27788720..27791129-chr10:27796787..27799412,2	K562	blood:

Variant related genes	Relation type
ENSG00000099246	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16928036	1.00[AMR][1000 genomes]
rs2244232	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2248059	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2477314	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2642272	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2763302	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2763304	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2763306	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2763310	0.84[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794000-27801200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:27794200-27799400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:27794200-27800200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:27794200-27803800	Weak transcription	Lung	lung
5	chr10:27794200-27806800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:27794200-27817000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:27794400-27798600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr10:27794400-27798800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:27794400-27799600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:27794400-27824000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:27794800-27799000	Weak transcription	Placenta	Placenta
13	chr10:27794800-27800200	Weak transcription	Fetal Stomach	stomach
14	chr10:27794800-27800800	Weak transcription	Right Ventricle	heart
15	chr10:27794800-27802400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:27794800-27802400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:27794800-27814200	Weak transcription	Ovary	ovary
18	chr10:27794800-27814600	Weak transcription	HSMMtube	muscle
19	chr10:27794800-27822800	Weak transcription	Colonic Mucosa	Colon
20	chr10:27794800-27823200	Weak transcription	Esophagus	oesophagus
21	chr10:27794800-27823200	Weak transcription	Spleen	Spleen
22	chr10:27795000-27798600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:27795000-27798800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:27795000-27798800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:27795000-27799000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:27795000-27799200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:27795000-27799200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:27795000-27800200	Weak transcription	Fetal Intestine Small	intestine
29	chr10:27795000-27800800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:27795000-27802800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:27795000-27806000	Weak transcription	Fetal Kidney	kidney
32	chr10:27795000-27813000	Weak transcription	Right Atrium	heart
33	chr10:27795200-27798400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:27795200-27799200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:27795200-27800400	Weak transcription	A549	lung
36	chr10:27795200-27802400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:27795200-27813800	Weak transcription	Fetal Brain Male	brain
38	chr10:27795200-27816800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:27795400-27799000	Weak transcription	HSMM	muscle
40	chr10:27795400-27799800	Weak transcription	Osteobl	bone
41	chr10:27795400-27802400	Weak transcription	Fetal Brain Female	brain
42	chr10:27795600-27798400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:27795600-27801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:27795600-27801400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:27795600-27802400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr10:27795600-27802600	Weak transcription	Brain Angular Gyrus	brain
47	chr10:27795600-27814800	Weak transcription	Pancreas	Pancrea
48	chr10:27795600-27816800	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:27795800-27798400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr10:27795800-27798600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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