Variant report

Variant	rs2477360
Chromosome Location	chr1:196254970-196254971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16839769	1.00[MKK][hapmap]
rs1748509	1.00[YRI][hapmap]
rs2477353	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2477555	1.00[YRI][hapmap]
rs2477557	0.87[AFR][1000 genomes]
rs3928858	0.93[MKK][hapmap]
rs4545283	1.00[YRI][hapmap]
rs588211	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6413933	0.93[MKK][hapmap]
rs73065810	1.00[AFR][1000 genomes]
rs73065829	1.00[AFR][1000 genomes]
rs73065851	1.00[AFR][1000 genomes]
rs73067610	1.00[AFR][1000 genomes]
rs73067631	0.93[AFR][1000 genomes]
rs73067634	0.93[AFR][1000 genomes]
rs73067636	0.93[AFR][1000 genomes]
rs977157	0.92[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872952	chr1:196174790-196304223	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv548741	chr1:196186750-196293493	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832237	chr1:196205674-196328500	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196234800-196255400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:196244600-196272400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:196249200-196281400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:196250600-196258400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:196250800-196255400	Weak transcription	Ovary	ovary
6	chr1:196250800-196271600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:196251000-196271600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:196251800-196255600	Weak transcription	Liver	Liver
9	chr1:196251800-196261400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:196252200-196272200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:196253200-196271600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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