Variant report

Variant	rs2477938
Chromosome Location	chr10:27109376-27109377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2477939	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs597171	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596332	1.00[EUR][1000 genomes]
rs9334169	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
2	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27091800-27113200	Weak transcription	Placenta	Placenta
4	chr10:27093400-27112400	Weak transcription	Left Ventricle	heart
5	chr10:27094600-27111200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:27094800-27111200	Weak transcription	Ovary	ovary
7	chr10:27095000-27130600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:27095200-27110800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:27095200-27119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:27095400-27110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:27095400-27111200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:27095400-27113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:27095400-27116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:27095400-27129800	Weak transcription	NHEK	skin
16	chr10:27095600-27109800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:27095600-27111000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:27095600-27114600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:27095600-27115400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:27095600-27129000	Weak transcription	Right Atrium	heart
21	chr10:27095600-27132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:27095800-27113400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:27096800-27110800	Weak transcription	Dnd41	blood
25	chr10:27096800-27112400	Weak transcription	Gastric	stomach
26	chr10:27097200-27120000	Weak transcription	HepG2	liver
27	chr10:27097600-27109800	Weak transcription	Fetal Stomach	stomach
28	chr10:27097800-27110400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:27099000-27113800	Weak transcription	Fetal Brain Female	brain
30	chr10:27099800-27128800	Weak transcription	K562	blood
31	chr10:27101800-27129000	Weak transcription	Stomach Mucosa	stomach
32	chr10:27104000-27109800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:27104400-27110800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:27104800-27119200	Weak transcription	Esophagus	oesophagus
35	chr10:27104800-27129200	Weak transcription	Colonic Mucosa	Colon
36	chr10:27105000-27112400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:27105000-27122000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:27105200-27111200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:27105200-27112600	Weak transcription	Small Intestine	intestine
40	chr10:27105400-27110800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:27105400-27113400	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:27105800-27114000	Weak transcription	HSMM	muscle
43	chr10:27106000-27110000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr10:27106000-27112800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:27106000-27113800	Weak transcription	Liver	Liver
46	chr10:27106200-27109400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:27106200-27109600	Weak transcription	Fetal Intestine Small	intestine
48	chr10:27106200-27110600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:27106200-27113200	Weak transcription	Lung	lung
50	chr10:27106400-27112400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links