Variant report

Variant	rs2477941
Chromosome Location	chr10:27133299-27133300
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27131106..27133856-chr10:27141673..27144502,2	MCF-7	breast:
2	chr10:27098403..27099996-chr10:27130981..27133692,2	K562	blood:
3	chr10:27130680..27133972-chr10:27147715..27151504,4	K562	blood:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv11591	chr10:27117697-27135748	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:27111800-27147000	Weak transcription	Fetal Intestine Large	intestine
4	chr10:27119600-27133600	Weak transcription	Thymus	Thymus
5	chr10:27119600-27147200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:27120600-27142600	Weak transcription	HepG2	liver
7	chr10:27122600-27136800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:27122600-27143400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:27123000-27145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:27124400-27146200	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:27126400-27133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:27126400-27133400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:27126600-27135600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:27126600-27140000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:27127200-27137000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr10:27128000-27139600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:27128000-27143200	Weak transcription	Osteobl	bone
18	chr10:27128400-27136800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:27129200-27142600	Weak transcription	Right Ventricle	heart
20	chr10:27129400-27133600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:27129400-27133600	Weak transcription	Brain Substantia Nigra	brain
22	chr10:27129400-27136200	Weak transcription	Left Ventricle	heart
23	chr10:27129400-27142000	Weak transcription	Lung	lung
24	chr10:27129400-27146000	Weak transcription	Pancreas	Pancrea
25	chr10:27129400-27146400	Weak transcription	Gastric	stomach
26	chr10:27129400-27146600	Weak transcription	Esophagus	oesophagus
27	chr10:27129400-27147200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:27129400-27148200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:27129600-27146600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:27130000-27133600	Weak transcription	Fetal Brain Female	brain
31	chr10:27130000-27135400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr10:27130000-27140000	Weak transcription	Fetal Lung	lung
33	chr10:27130000-27143800	Weak transcription	Brain Angular Gyrus	brain
34	chr10:27130200-27133400	Weak transcription	Adipose Nuclei	Adipose
35	chr10:27130200-27140400	Weak transcription	Brain Anterior Caudate	brain
36	chr10:27130200-27143000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr10:27130200-27143600	Weak transcription	NHDF-Ad	bronchial
38	chr10:27130200-27145600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr10:27130800-27133400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:27130800-27145000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:27131200-27140200	Weak transcription	Small Intestine	intestine
42	chr10:27131200-27143200	Weak transcription	Stomach Mucosa	stomach
43	chr10:27131200-27143400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr10:27131200-27146000	Weak transcription	Right Atrium	heart
45	chr10:27131400-27133400	Weak transcription	Primary T cells from cord blood	blood
46	chr10:27131400-27135600	Weak transcription	Primary B cells from cord blood	blood
47	chr10:27131600-27145000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:27131800-27133400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:27132000-27133400	Weak transcription	Fetal Thymus	thymus
50	chr10:27132000-27142800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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