Variant report

Variant	rs2477942
Chromosome Location	chr10:27158389-27158390
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27150190..27150757-chr10:27158129..27158952,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2477943	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505965	0.87[AFR][1000 genomes]
rs3004235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596336	1.00[EUR][1000 genomes]
rs9334169	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv947781	chr10:27157708-27168848	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27153000-27158400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr10:27153400-27158400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:27155000-27160800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:27155800-27159200	Enhancers	NHEK	skin
5	chr10:27156600-27158800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:27157000-27160000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:27157200-27158400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:27157800-27158600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:27157800-27158800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr10:27157800-27159400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr10:27158000-27158400	Enhancers	HMEC	breast
12	chr10:27158000-27158800	Enhancers	Pancreas	Pancrea
13	chr10:27158000-27159000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:27158200-27158600	Enhancers	Brain Anterior Caudate	brain
15	chr10:27158200-27158600	Enhancers	Esophagus	oesophagus
16	chr10:27158200-27158600	Enhancers	Hela-S3	cervix
17	chr10:27158200-27158800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:27158200-27158800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:27158200-27158800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:27158200-27158800	Enhancers	Fetal Thymus	thymus
21	chr10:27158200-27159000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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