Variant report

Variant	rs2481047
Chromosome Location	chr6:16891341-16891342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1114845	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1118328	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1118329	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12179053	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12181139	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12181151	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2250219	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2450972	0.87[ASN][1000 genomes]
rs2450981	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2450982	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2481040	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2481041	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2481045	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2481052	0.89[ASN][1000 genomes]
rs2481055	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2484237	0.83[ASN][1000 genomes]
rs2484239	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2484243	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2504943	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2504947	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2504951	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2504954	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2619276	0.85[EUR][1000 genomes]
rs2634657	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2634658	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2634659	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2774219	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2774222	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2774225	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2774227	0.85[EUR][1000 genomes]
rs2774228	0.84[EUR][1000 genomes]
rs2774229	0.83[EUR][1000 genomes]
rs6924859	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6925984	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6926553	0.81[ASN][1000 genomes]
rs9457882	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758037	chr6:16873271-16912538	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2759409	chr6:16873271-16912538	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv601016	chr6:16885017-16892412	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16890600-16891800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:16890600-16892000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:16891200-16892400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:16891200-16892400	Enhancers	K562	blood

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