Variant report

Variant	rs2481890
Chromosome Location	chr13:38959854-38959855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1330961	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1330966	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1411739	1.00[AMR][1000 genomes]
rs1831462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2481885	1.00[AMR][1000 genomes]
rs2485780	1.00[ASW][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2496461	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38956400-38960200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:38957200-38962400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:38957400-38960200	Weak transcription	Fetal Lung	lung
4	chr13:38959000-38960000	Enhancers	Ovary	ovary
5	chr13:38959000-38960600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:38959200-38960000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:38959200-38960000	Enhancers	Primary hematopoietic stem cells	blood
8	chr13:38959200-38960000	Flanking Active TSS	Fetal Kidney	kidney
9	chr13:38959200-38960200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:38959200-38961200	Enhancers	HMEC	breast
11	chr13:38959400-38960200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr13:38959400-38960800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:38959400-38962600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:38959600-38960200	Enhancers	NHDF-Ad	bronchial
15	chr13:38959600-38960400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr13:38959600-38962600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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