Variant report

Variant	rs2483610
Chromosome Location	chr10:116392868-116392869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116391283..116394049-chr10:116397576..116399844,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs2483517	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2483518	1.00[AMR][1000 genomes]
rs2483520	1.00[AMR][1000 genomes]
rs2483521	1.00[AMR][1000 genomes]
rs2483522	1.00[AMR][1000 genomes]
rs2483523	1.00[AMR][1000 genomes]
rs2483524	1.00[AMR][1000 genomes]
rs2483525	1.00[AMR][1000 genomes]
rs2483526	1.00[AMR][1000 genomes]
rs2483527	1.00[AMR][1000 genomes]
rs2483528	1.00[AMR][1000 genomes]
rs2483529	1.00[AMR][1000 genomes]
rs2483530	1.00[AMR][1000 genomes]
rs2483608	0.88[AFR][1000 genomes]
rs2483611	0.83[AFR][1000 genomes]
rs2483613	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2497675	0.85[AFR][1000 genomes]
rs2497678	1.00[AMR][1000 genomes]
rs2497680	1.00[AMR][1000 genomes]
rs2497683	1.00[AMR][1000 genomes]
rs2497685	1.00[AMR][1000 genomes]
rs2497690	1.00[AMR][1000 genomes]
rs2497691	1.00[AMR][1000 genomes]
rs2497692	1.00[AMR][1000 genomes]
rs2497693	1.00[AMR][1000 genomes]
rs2497695	1.00[AMR][1000 genomes]
rs2497696	1.00[AMR][1000 genomes]
rs2497697	1.00[AMR][1000 genomes]
rs2497698	1.00[AMR][1000 genomes]
rs2497699	1.00[AMR][1000 genomes]
rs2497700	1.00[AMR][1000 genomes]
rs55776012	1.00[AMR][1000 genomes]
rs56274206	1.00[AMR][1000 genomes]
rs56970375	1.00[AMR][1000 genomes]
rs57898409	1.00[AMR][1000 genomes]
rs59244961	1.00[AMR][1000 genomes]
rs60050182	1.00[AMR][1000 genomes]
rs60982284	1.00[AMR][1000 genomes]
rs74158021	1.00[AMR][1000 genomes]
rs74158023	1.00[AMR][1000 genomes]
rs74158024	1.00[AMR][1000 genomes]
rs74158026	1.00[AMR][1000 genomes]
rs74158027	1.00[AMR][1000 genomes]
rs74158028	1.00[AMR][1000 genomes]
rs74158029	1.00[AMR][1000 genomes]
rs74158030	1.00[AMR][1000 genomes]
rs9420167	1.00[AMR][1000 genomes]
rs9421196	1.00[AMR][1000 genomes]
rs9421197	1.00[AMR][1000 genomes]
rs9421198	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116391000-116393000	Enhancers	Small Intestine	intestine
2	chr10:116391400-116395800	Weak transcription	Spleen	Spleen
3	chr10:116391800-116395200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr10:116392000-116393200	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
5	chr10:116392000-116393600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:116392000-116393600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:116392000-116393600	Flanking Active TSS	Stomach Smooth Muscle	stomach
8	chr10:116392000-116393600	Flanking Active TSS	NH-A	brain
9	chr10:116392000-116393800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:116392000-116393800	Flanking Active TSS	A549	lung
11	chr10:116392000-116393800	Flanking Active TSS	HSMM	muscle
12	chr10:116392000-116395000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:116392200-116393000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:116392200-116393000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
15	chr10:116392200-116393000	Flanking Active TSS	Liver	Liver
16	chr10:116392200-116393000	Bivalent Enhancer	Brain Substantia Nigra	brain
17	chr10:116392200-116393000	Flanking Bivalent TSS/Enh	HepG2	liver
18	chr10:116392200-116393200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
19	chr10:116392200-116393200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
20	chr10:116392200-116393200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:116392200-116393400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:116392200-116393400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:116392200-116393600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:116392200-116393600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:116392200-116393800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:116392200-116393800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:116392200-116393800	Bivalent Enhancer	Fetal Stomach	stomach
28	chr10:116392200-116393800	Flanking Active TSS	NHLF	lung
29	chr10:116392200-116395000	Enhancers	Primary hematopoietic stem cells	blood
30	chr10:116392200-116395400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:116392200-116395400	Enhancers	HMEC	breast
32	chr10:116392200-116395400	Enhancers	NHEK	skin
33	chr10:116392200-116395800	Enhancers	Placenta	Placenta
34	chr10:116392400-116393000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
35	chr10:116392400-116393000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
36	chr10:116392400-116393000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
37	chr10:116392400-116393000	Bivalent Enhancer	Fetal Kidney	kidney
38	chr10:116392400-116393000	Enhancers	Gastric	stomach
39	chr10:116392400-116393000	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
40	chr10:116392400-116393000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
41	chr10:116392400-116393000	Bivalent Enhancer	Stomach Mucosa	stomach
42	chr10:116392400-116393200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
43	chr10:116392400-116393200	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr10:116392400-116393200	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
45	chr10:116392400-116393200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
46	chr10:116392400-116393400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:116392400-116393400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:116392400-116393400	Enhancers	Aorta	Aorta
49	chr10:116392400-116393400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
50	chr10:116392400-116393400	Bivalent Enhancer	Brain Hippocampus Middle	brain

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