Variant report

Variant	rs2487435
Chromosome Location	chr6:70583506-70583507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2487436	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2487437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2487438	0.82[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2487439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2502552	0.81[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2502562	0.80[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70578600-70591600	Weak transcription	Fetal Heart	heart
2	chr6:70580000-70585000	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr6:70582600-70584000	Enhancers	Fetal Intestine Large	intestine
4	chr6:70582800-70584200	Genic enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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