Variant report

Variant	rs2488855
Chromosome Location	chr14:43531322-43531323
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10134332	0.82[EUR][1000 genomes]
rs10141599	0.83[ASN][1000 genomes]
rs1899146	0.85[ASN][1000 genomes]
rs1899150	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1954390	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2008209	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2096273	0.90[ASN][1000 genomes]
rs2455978	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2455979	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2488856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488888	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2488890	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2798397	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2807794	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2807795	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4420440	0.85[ASN][1000 genomes]
rs73339930	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73339948	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73339949	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73339954	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73339955	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8005943	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564618	chr14:43056649-43773651	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv430996	chr14:43140250-43829050	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048877	chr14:43167329-43863100	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1049409	chr14:43342305-43978776	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527004	chr14:43392107-43555789	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1049284	chr14:43400494-43948072	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv901765	chr14:43463396-43537857	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv832782	chr14:43470370-43620110	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1035264	chr14:43470467-43901187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv542064	chr14:43470467-43901187	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv564626	chr14:43480483-43606391	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv901767	chr14:43480483-43630817	Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv901769	chr14:43485632-43555789	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv901770	chr14:43485632-43589221	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv901771	chr14:43485632-43791937	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv901773	chr14:43488875-43544443	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv901774	chr14:43490932-43537857	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv564627	chr14:43490932-43551198	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv901775	chr14:43490932-43744480	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv1054469	chr14:43496577-43727956	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1255	chr14:43507697-43545773	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv1821527	chr14:43513478-44010789	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	esv3345429	chr14:43523251-43549029	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
24	nsv974332	chr14:43524463-43546649	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:43531000-43531400	Enhancers	A549	lung

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