Variant report

Variant	rs2489581
Chromosome Location	chr10:26994981-26994982
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10829053	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs11015236	0.90[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs11015237	0.91[ASN][1000 genomes]
rs11015238	0.91[ASN][1000 genomes]
rs11015239	0.91[ASN][1000 genomes]
rs11015245	0.90[CHB][hapmap]
rs11015249	1.00[CHB][hapmap]
rs12245888	0.91[ASN][1000 genomes]
rs12252759	0.89[ASN][1000 genomes]
rs1677728	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1677730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1748353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1748354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1748355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1748356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1748357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1780179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1780180	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1780181	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1780182	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1780184	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1780192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2448107	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2477295	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2477297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477298	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2477299	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3118155	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749181	0.81[ASN][1000 genomes]
rs6482571	0.91[ASN][1000 genomes]
rs7090448	0.87[ASN][1000 genomes]
rs7100835	0.89[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv1798973	chr10:26968171-27001814	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550233	chr10:26968171-27011323	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26987600-26995000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:26987600-26995000	Weak transcription	Gastric	stomach
3	chr10:26987600-26995000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:26987600-26996200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:26987600-26996200	Weak transcription	Pancreas	Pancrea
6	chr10:26987600-26996800	Weak transcription	Aorta	Aorta
7	chr10:26987600-27010400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:26987600-27024400	Weak transcription	Fetal Kidney	kidney
9	chr10:26987800-26995400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:26987800-27010800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:26987800-27020400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:26987800-27031200	Weak transcription	NHDF-Ad	bronchial
13	chr10:26988000-26995000	Weak transcription	NHLF	lung
14	chr10:26988000-26995200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:26988000-26995400	Weak transcription	Placenta	Placenta
16	chr10:26988000-26995800	Weak transcription	Brain Angular Gyrus	brain
17	chr10:26988000-26996200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:26988000-26996400	Weak transcription	HSMM	muscle
19	chr10:26988000-26996400	Weak transcription	Osteobl	bone
20	chr10:26988000-26996600	Weak transcription	HUVEC	blood vessel
21	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:26988200-26995200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:26988200-26995200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:26988200-26995200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:26988200-26996000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:26988200-27004600	Weak transcription	NH-A	brain
27	chr10:26988200-27009600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr10:26988200-27009800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:26988400-26996200	Weak transcription	Fetal Heart	heart
30	chr10:26988400-26996600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:26988400-27009800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:26988800-26996000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:26988800-26997000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:26989000-26995000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:26989400-27031000	Weak transcription	Small Intestine	intestine
36	chr10:26989600-26995000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr10:26990200-26997200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:26990400-27002400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:26990800-26995200	Weak transcription	Colonic Mucosa	Colon
40	chr10:26990800-26998800	Strong transcription	Dnd41	blood
41	chr10:26991000-26995000	Weak transcription	Lung	lung
42	chr10:26991000-26995000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr10:26991000-26996800	Strong transcription	Fetal Thymus	thymus
44	chr10:26991000-26997000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:26991600-26998200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:26991600-26998800	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:26992000-26995200	Weak transcription	Primary B cells from cord blood	blood
48	chr10:26992000-26998800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:26993000-26997800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:26993000-26998800	Strong transcription	HUES48 Cell Line	embryonic stem cell

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