The 2.0 version of rSNPBase

Variant report

Variant rs248987
Chromosome Location chr5:80440531-80440532
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:28 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80410600-80446600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr5:80418400-80443800 Weak transcription Brain Angular Gyrus brain
3 chr5:80421800-80443600 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr5:80422000-80443400 Weak transcription Brain Cingulate Gyrus brain
5 chr5:80423000-80451400 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr5:80423400-80443800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr5:80424400-80443800 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr5:80424400-80445000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr5:80426400-80443800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr5:80429200-80443800 Weak transcription Primary T cells fromperipheralblood blood
11 chr5:80432800-80443800 Weak transcription Brain Inferior Temporal Lobe brain
12 chr5:80434600-80442200 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr5:80436200-80442800 Weak transcription Primary T helper cells fromperipheralblood blood
14 chr5:80436600-80443400 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr5:80436800-80440600 Weak transcription Psoas Muscle Psoas
16 chr5:80436800-80441200 Weak transcription HepG2 liver
17 chr5:80436800-80441400 Weak transcription Fetal Muscle Trunk muscle
18 chr5:80436800-80448600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr5:80437200-80440600 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr5:80437200-80443800 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr5:80437400-80447000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr5:80438000-80440600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr5:80438200-80443400 Weak transcription Cortex derived primary cultured neurospheres brain
24 chr5:80438600-80442000 Weak transcription Brain Hippocampus Middle brain
25 chr5:80438800-80441400 Weak transcription Primary T cells from cord blood blood
26 chr5:80438800-80445800 Weak transcription Fetal Muscle Leg muscle
27 chr5:80438800-80446600 Weak transcription Fetal Stomach stomach
28 chr5:80439600-80440600 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015