Variant report

Variant	rs2490158
Chromosome Location	chr6:48777095-48777096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16878260	1.00[AMR][1000 genomes]
rs16878289	1.00[AMR][1000 genomes]
rs16878293	1.00[AMR][1000 genomes]
rs2490129	1.00[AMR][1000 genomes]
rs2490159	0.96[AFR][1000 genomes]
rs2490160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2490161	1.00[AMR][1000 genomes]
rs2490163	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2495864	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2495865	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2997371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3001924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57604599	1.00[AMR][1000 genomes]
rs57668127	1.00[AMR][1000 genomes]
rs73479521	1.00[AMR][1000 genomes]
rs73479522	1.00[AMR][1000 genomes]
rs73479531	1.00[AMR][1000 genomes]
rs73479536	1.00[AMR][1000 genomes]
rs73479549	1.00[AMR][1000 genomes]
rs73479552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033151	chr6:48067287-48797029	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538217	chr6:48067287-48797029	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48777000-48777400	Enhancers	Fetal Brain Male	brain
2	chr6:48777000-48777800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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