Variant report

Variant	rs2492559
Chromosome Location	chr13:69467726-69467727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13313261	0.82[ASN][1000 genomes]
rs1340720	0.83[ASN][1000 genomes]
rs1370946	0.99[ASN][1000 genomes]
rs2492553	0.86[ASN][1000 genomes]
rs6562542	0.92[ASN][1000 genomes]
rs6562545	0.83[ASN][1000 genomes]
rs7326320	0.83[ASN][1000 genomes]
rs7334608	0.91[ASN][1000 genomes]
rs7999508	0.83[ASN][1000 genomes]
rs8000608	0.88[ASN][1000 genomes]
rs8000922	0.99[ASN][1000 genomes]
rs9317745	0.92[ASN][1000 genomes]
rs9317750	0.92[ASN][1000 genomes]
rs9599345	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9599354	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1046227	chr13:69402973-69543492	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv471146	chr13:69444490-69484933	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv455958	chr13:69448114-69481733	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv562199	chr13:69448114-69481733	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv900453	chr13:69449431-69757982	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69463200-69472600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:69465800-69471400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:69467000-69467800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:69467000-69471800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:69467200-69471200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:69467200-69471400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:69467400-69467800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:69467400-69471600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr13:69467600-69468200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:69467600-69468600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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