Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10044983	0.89[EUR][1000 genomes]
rs10053898	0.91[EUR][1000 genomes]
rs10060156	0.89[EUR][1000 genomes]
rs10061410	0.95[EUR][1000 genomes]
rs10061579	0.83[EUR][1000 genomes]
rs10066093	0.91[EUR][1000 genomes]
rs10066139	0.94[EUR][1000 genomes]
rs10067787	0.89[EUR][1000 genomes]
rs10067851	0.93[EUR][1000 genomes]
rs10069142	0.86[EUR][1000 genomes]
rs10076240	0.89[EUR][1000 genomes]
rs10076383	0.84[EUR][1000 genomes]
rs10077593	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10079490	0.84[EUR][1000 genomes]
rs1014496	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10214181	0.87[EUR][1000 genomes]
rs1422286	0.93[EUR][1000 genomes]
rs1472623	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2080903	0.89[EUR][1000 genomes]
rs2098631	0.93[EUR][1000 genomes]
rs4920890	0.91[EUR][1000 genomes]
rs4920891	0.89[EUR][1000 genomes]
rs4921023	0.94[EUR][1000 genomes]
rs4921024	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5028204	0.81[EUR][1000 genomes]
rs5028205	0.90[EUR][1000 genomes]
rs5028206	0.86[EUR][1000 genomes]
rs56104345	0.93[EUR][1000 genomes]
rs59276809	0.85[EUR][1000 genomes]
rs62371714	0.93[EUR][1000 genomes]
rs62371715	0.92[EUR][1000 genomes]
rs6869363	0.86[EUR][1000 genomes]
rs731650	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7706913	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs995495	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1024641	chr5:115030110-115123474	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1021139	chr5:115036724-115131280	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv949677	chr5:115104829-115496168	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv882734	chr5:115112928-115130906	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115091800-115117200	Weak transcription	Liver	Liver
2	chr5:115110800-115117400	Weak transcription	Ovary	ovary

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