Variant report

Variant	rs2495891
Chromosome Location	chr6:48629689-48629690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10456594	0.81[ASN][1000 genomes]
rs10456595	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10498776	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807394	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10948423	0.85[EUR][1000 genomes]
rs10948427	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10948435	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11754486	0.85[EUR][1000 genomes]
rs11964499	0.95[ASN][1000 genomes]
rs11964998	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11965358	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11967722	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12191801	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194657	0.84[EUR][1000 genomes]
rs12199129	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12202400	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12207041	0.81[ASN][1000 genomes]
rs1343441	0.95[ASN][1000 genomes]
rs1427155	0.95[ASN][1000 genomes]
rs1443637	0.81[ASN][1000 genomes]
rs2433659	0.88[AFR][1000 genomes]
rs2433661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2433662	0.91[AFR][1000 genomes]
rs2474479	0.91[AFR][1000 genomes]
rs2474480	0.91[AFR][1000 genomes]
rs2474503	0.91[AFR][1000 genomes]
rs2495888	0.82[AFR][1000 genomes]
rs4122442	0.81[ASN][1000 genomes]
rs6932021	0.95[ASN][1000 genomes]
rs72864060	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72864061	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72865750	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349447	0.85[EUR][1000 genomes]
rs9349448	0.81[ASN][1000 genomes]
rs9349449	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9357578	0.81[ASN][1000 genomes]
rs9357579	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9357580	0.87[ASN][1000 genomes]
rs9367314	0.85[EUR][1000 genomes]
rs9367315	0.81[ASN][1000 genomes]
rs9367316	0.81[ASN][1000 genomes]
rs9367317	0.81[ASN][1000 genomes]
rs9369788	0.85[EUR][1000 genomes]
rs9369790	0.85[EUR][1000 genomes]
rs9369791	0.85[EUR][1000 genomes]
rs9369792	0.81[ASN][1000 genomes]
rs9369797	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9369800	0.84[ASN][1000 genomes]
rs9381662	0.85[EUR][1000 genomes]
rs9381663	0.85[EUR][1000 genomes]
rs9381664	0.81[ASN][1000 genomes]
rs9381665	0.81[ASN][1000 genomes]
rs9381670	0.81[ASN][1000 genomes]
rs9381671	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9381672	0.82[ASN][1000 genomes]
rs9381675	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9381678	0.95[ASN][1000 genomes]
rs9381679	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381682	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381683	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395367	0.84[EUR][1000 genomes]
rs9395369	0.85[EUR][1000 genomes]
rs9395371	0.81[ASN][1000 genomes]
rs9395382	0.86[ASN][1000 genomes]
rs9395387	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395388	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395393	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9395394	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603035	chr6:47902243-48700995	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1033151	chr6:48067287-48797029	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538217	chr6:48067287-48797029	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830658	chr6:48497904-48632523	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2752125	chr6:48575963-48718589	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1034217	chr6:48601590-48714176	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv603036	chr6:48601723-48711041	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1015258	chr6:48607583-48714176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv1024115	chr6:48609036-48648634	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48627200-48632400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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