Variant report

Variant	rs2496399
Chromosome Location	chr13:39331354-39331355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2442347	1.00[AFR][1000 genomes]
rs2442349	1.00[AFR][1000 genomes]
rs2442371	1.00[AFR][1000 genomes]
rs2496397	1.00[AFR][1000 genomes]
rs2496401	1.00[AFR][1000 genomes]
rs4512974	1.00[AFR][1000 genomes]
rs4619269	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39298200-39339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39322800-39337200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:39325800-39332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:39326200-39332600	Weak transcription	Brain Germinal Matrix	brain
5	chr13:39326400-39336000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:39326800-39332400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:39328000-39332600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:39328800-39332600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:39328800-39333000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:39328800-39337400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr13:39329000-39332400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr13:39329600-39332600	Weak transcription	Psoas Muscle	Psoas
13	chr13:39330200-39331800	Weak transcription	Fetal Muscle Leg	muscle
14	chr13:39330400-39332000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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