Variant report

Variant	rs2497625
Chromosome Location	chr13:62240214-62240215
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11616619	0.87[ASN][1000 genomes]
rs11617966	0.87[ASN][1000 genomes]
rs11618197	0.86[ASN][1000 genomes]
rs11618840	0.87[ASN][1000 genomes]
rs12583182	0.87[ASN][1000 genomes]
rs12584815	0.87[ASN][1000 genomes]
rs12854026	0.84[ASN][1000 genomes]
rs12855361	0.84[ASN][1000 genomes]
rs12856551	0.80[ASN][1000 genomes]
rs12857633	0.80[ASN][1000 genomes]
rs12865850	0.84[ASN][1000 genomes]
rs12870813	0.86[ASN][1000 genomes]
rs12873364	0.84[ASN][1000 genomes]
rs12877762	0.84[ASN][1000 genomes]
rs17070255	0.80[ASN][1000 genomes]
rs17200703	0.87[EUR][1000 genomes]
rs2329312	0.84[EUR][1000 genomes]
rs2487339	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2487340	0.89[EUR][1000 genomes]
rs2487342	0.89[EUR][1000 genomes]
rs2876806	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3002262	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34157221	0.87[ASN][1000 genomes]
rs34472182	0.87[ASN][1000 genomes]
rs34486297	0.87[ASN][1000 genomes]
rs34572426	0.87[ASN][1000 genomes]
rs34689230	0.80[ASN][1000 genomes]
rs34768890	0.86[ASN][1000 genomes]
rs35278423	0.87[ASN][1000 genomes]
rs35544122	0.80[ASN][1000 genomes]
rs35990992	0.86[ASN][1000 genomes]
rs36115037	0.86[ASN][1000 genomes]
rs4433704	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4884383	0.87[EUR][1000 genomes]
rs4884390	0.87[ASN][1000 genomes]
rs4886343	0.80[ASN][1000 genomes]
rs4886344	0.80[ASN][1000 genomes]
rs4886345	0.87[EUR][1000 genomes]
rs59756022	0.87[ASN][1000 genomes]
rs60915788	0.80[ASN][1000 genomes]
rs61953379	0.87[ASN][1000 genomes]
rs61955263	0.84[ASN][1000 genomes]
rs7994446	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9539235	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1053698	chr13:62108064-62271909	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900250	chr13:62147535-62321073	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62237600-62240800	Enhancers	Fetal Intestine Large	intestine
2	chr13:62239600-62240600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:62239600-62241400	Enhancers	HepG2	liver
4	chr13:62239800-62243400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:62239800-62247000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links