Variant report

Variant	rs2498607
Chromosome Location	chr9:10251050-10251051
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:10245322..10247712-chr9:10249669..10252013,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10756012	0.87[ASN][1000 genomes]
rs10756013	0.86[ASN][1000 genomes]
rs10756014	0.86[ASN][1000 genomes]
rs10756015	0.87[ASN][1000 genomes]
rs10756016	0.87[ASN][1000 genomes]
rs10809046	0.84[ASN][1000 genomes]
rs10809047	0.87[ASN][1000 genomes]
rs10809049	0.88[ASN][1000 genomes]
rs10809052	0.82[EUR][1000 genomes]
rs10958978	0.88[ASN][1000 genomes]
rs10958979	0.88[ASN][1000 genomes]
rs10958980	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10958991	0.90[EUR][1000 genomes]
rs12236963	0.86[ASN][1000 genomes]
rs12237121	0.87[ASN][1000 genomes]
rs12237243	0.88[ASN][1000 genomes]
rs12344061	0.87[ASN][1000 genomes]
rs1322144	0.87[ASN][1000 genomes]
rs1322147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322148	0.88[ASN][1000 genomes]
rs1322153	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1923357	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2065071	0.85[ASN][1000 genomes]
rs2065072	0.88[ASN][1000 genomes]
rs2382197	0.87[ASN][1000 genomes]
rs2475329	0.83[AFR][1000 genomes]
rs2475335	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2475339	0.85[EUR][1000 genomes]
rs2475349	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2498610	0.82[AFR][1000 genomes]
rs2498612	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2498615	0.82[AFR][1000 genomes]
rs4143458	0.88[ASN][1000 genomes]
rs4143459	0.88[ASN][1000 genomes]
rs4487828	0.87[ASN][1000 genomes]
rs4741021	0.88[ASN][1000 genomes]
rs4741022	0.88[ASN][1000 genomes]
rs4741024	0.88[ASN][1000 genomes]
rs62539728	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1033178	chr9:10169848-10428731	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv471280	chr9:10172572-10277602	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv466158	chr9:10172573-10277602	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv613375	chr9:10172573-10277602	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2758179	chr9:10188450-10370398	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2759666	chr9:10188450-10370398	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv892310	chr9:10197122-10279606	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1034040	chr9:10225500-10255910	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv892311	chr9:10226620-10265282	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv892312	chr9:10231178-10279606	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10250400-10252000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:10250600-10251200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:10250600-10251600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links