The 2.0 version of rSNPBase

Variant report

Variant rs2499005
Chromosome Location chr1:62372792-62372793
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62228600-62391800 Weak transcription Small Intestine intestine
2 chr1:62317800-62390400 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:62319000-62373800 Weak transcription Brain Angular Gyrus brain
4 chr1:62331800-62384200 Weak transcription Gastric stomach
5 chr1:62336000-62408600 Weak transcription Pancreas Pancrea
6 chr1:62336600-62380000 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr1:62340400-62399200 Weak transcription Primary hematopoietic stem cells blood
8 chr1:62346000-62389400 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:62346200-62417600 Weak transcription Rectal Smooth Muscle rectum
10 chr1:62350200-62397600 Weak transcription Esophagus oesophagus
11 chr1:62350600-62380200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr1:62350600-62391600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
13 chr1:62350600-62428200 Weak transcription Primary T helper naive cells from peripheral blood blood
14 chr1:62350800-62374200 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr1:62350800-62395800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr1:62350800-62397800 Weak transcription Primary T cells from cord blood blood
17 chr1:62350800-62417600 Weak transcription Ovary ovary
18 chr1:62352200-62375200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr1:62353400-62378400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr1:62353400-62380200 Weak transcription Aorta Aorta
21 chr1:62353600-62396000 Weak transcription Fetal Kidney kidney
22 chr1:62353800-62385400 Weak transcription Placenta Amnion Placenta Amnion
23 chr1:62353800-62408800 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr1:62354200-62375200 Weak transcription Left Ventricle heart
25 chr1:62355800-62374800 Weak transcription Stomach Smooth Muscle stomach
26 chr1:62358400-62374000 Weak transcription HMEC breast
27 chr1:62359000-62373200 Strong transcription Breast Myoepithelial Primary Cells Breast
28 chr1:62361200-62390800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr1:62361600-62375200 Weak transcription Lung lung
30 chr1:62361600-62382800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr1:62361600-62391800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr1:62361600-62408800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr1:62361800-62376200 Weak transcription Fetal Stomach stomach
34 chr1:62362000-62408600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:62363000-62391800 Weak transcription Stomach Mucosa stomach
36 chr1:62363400-62391400 Weak transcription A549 lung
37 chr1:62363800-62377000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr1:62364600-62380200 Weak transcription Primary B cells from peripheral blood blood
39 chr1:62366000-62375000 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr1:62366200-62379000 Weak transcription Primary T cells fromperipheralblood blood
41 chr1:62367000-62378600 Weak transcription HepG2 liver
42 chr1:62367600-62380200 Weak transcription Liver Liver
43 chr1:62368000-62375000 Weak transcription Fetal Intestine Large intestine
44 chr1:62368800-62374000 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr1:62369000-62373600 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr1:62369000-62375800 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr1:62369000-62376400 Weak transcription Fetal Intestine Small intestine
48 chr1:62370000-62379800 Weak transcription Skeletal Muscle Male skeletal muscle
49 chr1:62370400-62376800 Strong transcription Primary T helper cells fromperipheralblood blood
50 chr1:62371000-62373000 Weak transcription NHEK skin

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Last update: Aug 31, 2015