Variant report

Variant	rs2500002
Chromosome Location	chr11:5065048-5065049
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:5064612-5065090	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
OR52J3	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10768448	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs10768450	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs10837095	0.83[CEU][hapmap]
rs10837096	0.80[CEU][hapmap]
rs10837102	0.80[CEU][hapmap]
rs10837104	0.87[CEU][hapmap]
rs10837105	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs10837106	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs10837107	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs10837108	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs11035064	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs11035066	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs11035071	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs11035072	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs12288649	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs1378742	0.93[CHB][hapmap];0.94[ASN][1000 genomes]
rs1378743	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1378746	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1455952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1455967	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1463386	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1817207	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs1902318	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs2445277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2445306	0.94[ASN][1000 genomes]
rs2445307	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2445309	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2445310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2445315	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2500011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2500054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2959186	0.94[ASN][1000 genomes]
rs7924532	0.83[CEU][hapmap]
rs7930598	0.80[EUR][1000 genomes]
rs7933046	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs7937377	0.80[CEU][hapmap]
rs7938145	0.80[CEU][hapmap]
rs936143	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv526998	chr11:4954607-5074301	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1046693	chr11:4958462-5177455	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv540938	chr11:4958462-5177455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	esv2760169	chr11:4961518-5233821	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
8	nsv553219	chr11:5026200-5214413	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv976448	chr11:5054676-5071343	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv515951	chr11:5060941-5073101	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv896919	chr11:5060941-5095774	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv3332106	chr11:5064960-5065552	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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