Variant report

Variant	rs2501865
Chromosome Location	chr1:161230065-161230066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12036229	0.81[CHB][hapmap]
rs2501862	0.94[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161228600-161230200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
2	chr1:161229200-161230200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:161229200-161230800	Weak transcription	Liver	Liver
4	chr1:161229200-161231200	Weak transcription	Lung	lung
5	chr1:161229400-161234800	Weak transcription	Ovary	ovary
6	chr1:161229600-161230400	Weak transcription	Esophagus	oesophagus
7	chr1:161229800-161230200	Bivalent Enhancer	HepG2	liver
8	chr1:161229800-161230600	Active TSS	Brain Anterior Caudate	brain
9	chr1:161229800-161231000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:161229800-161231400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:161230000-161230200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
12	chr1:161230000-161230200	Bivalent/Poised TSS	Psoas Muscle	Psoas
13	chr1:161230000-161230200	Bivalent Enhancer	HSMMtube	muscle
14	chr1:161230000-161230400	Bivalent Enhancer	Fetal Stomach	stomach
15	chr1:161230000-161230400	Flanking Bivalent TSS/Enh	Hela-S3	cervix
16	chr1:161230000-161230600	Flanking Active TSS	Colon Smooth Muscle	Colon
17	chr1:161230000-161230600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
18	chr1:161230000-161230800	Bivalent Enhancer	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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