Variant report

Variant	rs2501880
Chromosome Location	chr1:161234796-161234797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv523318	chr1:161232772-161234883	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv520253	chr1:161234623-161237892	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2501880	MEF2D	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161229400-161234800	Weak transcription	Ovary	ovary
2	chr1:161231200-161235400	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:161231400-161235000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:161231600-161235000	Weak transcription	Placenta	Placenta
5	chr1:161231600-161235800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:161231600-161236000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:161231800-161235200	Weak transcription	Fetal Heart	heart
8	chr1:161231800-161235800	Weak transcription	Brain Anterior Caudate	brain
9	chr1:161232000-161236600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:161232400-161235200	Weak transcription	Fetal Stomach	stomach
11	chr1:161232600-161235200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr1:161232600-161237000	Weak transcription	GM12878-XiMat	blood
13	chr1:161233400-161237000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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