Variant report

Variant	rs2502466
Chromosome Location	chr6:75460968-75460969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75459206..75461737-chr6:75912359..75915403,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111799	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs12527909	0.87[ASN][1000 genomes]
rs1572468	0.87[ASN][1000 genomes]
rs1572470	0.87[ASN][1000 genomes]
rs1932830	0.87[ASN][1000 genomes]
rs1932831	0.86[ASN][1000 genomes]
rs1932832	0.87[ASN][1000 genomes]
rs2184822	0.87[ASN][1000 genomes]
rs2248180	0.87[ASN][1000 genomes]
rs2485118	0.87[ASN][1000 genomes]
rs2485119	0.87[ASN][1000 genomes]
rs2485121	0.87[ASN][1000 genomes]
rs2485122	0.87[ASN][1000 genomes]
rs2485123	0.87[ASN][1000 genomes]
rs2485124	0.87[ASN][1000 genomes]
rs2485125	0.87[ASN][1000 genomes]
rs2485126	0.87[ASN][1000 genomes]
rs2485127	0.87[ASN][1000 genomes]
rs2485128	0.87[ASN][1000 genomes]
rs2485454	0.97[ASN][1000 genomes]
rs2485455	0.97[ASN][1000 genomes]
rs2502465	0.97[ASN][1000 genomes]
rs2502530	0.87[ASN][1000 genomes]
rs2502531	0.87[ASN][1000 genomes]
rs2502532	0.87[ASN][1000 genomes]
rs2502539	0.87[ASN][1000 genomes]
rs2502540	0.87[ASN][1000 genomes]
rs4259220	0.89[ASN][1000 genomes]
rs4285290	0.87[ASN][1000 genomes]
rs4296858	0.87[ASN][1000 genomes]
rs4327652	0.89[ASN][1000 genomes]
rs4334941	0.89[ASN][1000 genomes]
rs4351215	0.89[ASN][1000 genomes]
rs4370330	0.83[ASN][1000 genomes]
rs4451100	0.87[ASN][1000 genomes]
rs4451101	0.87[ASN][1000 genomes]
rs4467739	0.89[ASN][1000 genomes]
rs4502892	0.87[ASN][1000 genomes]
rs4502893	0.89[ASN][1000 genomes]
rs4504443	0.87[ASN][1000 genomes]
rs4504444	0.89[ASN][1000 genomes]
rs4562097	0.87[ASN][1000 genomes]
rs4562098	0.86[ASN][1000 genomes]
rs4708160	0.89[ASN][1000 genomes]
rs6453769	0.89[ASN][1000 genomes]
rs6933532	0.87[ASN][1000 genomes]
rs7747181	0.87[ASN][1000 genomes]
rs7763785	0.87[ASN][1000 genomes]
rs7764171	0.87[ASN][1000 genomes]
rs7767428	0.87[ASN][1000 genomes]
rs7767552	0.87[ASN][1000 genomes]
rs9341491	0.89[ASN][1000 genomes]
rs9343205	0.87[ASN][1000 genomes]
rs9343206	0.87[ASN][1000 genomes]
rs9343207	0.87[ASN][1000 genomes]
rs9343208	0.87[ASN][1000 genomes]
rs9343211	0.87[ASN][1000 genomes]
rs9343216	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352146	0.87[ASN][1000 genomes]
rs9352147	0.87[ASN][1000 genomes]
rs9352148	0.87[ASN][1000 genomes]
rs9352152	0.87[ASN][1000 genomes]
rs9359105	0.87[ASN][1000 genomes]
rs9360838	0.87[ASN][1000 genomes]
rs9360839	0.87[ASN][1000 genomes]
rs9360840	0.87[ASN][1000 genomes]
rs9443053	0.87[ASN][1000 genomes]
rs9443054	0.87[ASN][1000 genomes]
rs9443056	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv603759	chr6:75432861-75461657	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75459000-75461000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:75459400-75464600	Weak transcription	Pancreas	Pancrea
3	chr6:75459800-75465400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:75460400-75461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:75460400-75461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:75460600-75461200	Enhancers	Hela-S3	cervix
7	chr6:75460600-75461800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:75460600-75461800	Weak transcription	HMEC	breast
9	chr6:75460600-75461800	Weak transcription	NHEK	skin
10	chr6:75460800-75467600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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