Variant report

Variant	rs2503430
Chromosome Location	chr13:48115493-48115494
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1359664	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1359666	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1547654	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1571064	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1575895	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070281	0.89[ASN][1000 genomes]
rs2478317	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2478334	0.91[EUR][1000 genomes]
rs2478335	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2478336	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2503428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2503429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2503443	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2503451	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2503452	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2503453	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55857069	0.91[EUR][1000 genomes]
rs56088519	0.87[EUR][1000 genomes]
rs56234161	0.87[EUR][1000 genomes]
rs73180381	0.91[EUR][1000 genomes]
rs73180389	0.91[EUR][1000 genomes]
rs73182280	0.91[EUR][1000 genomes]
rs73182288	0.91[EUR][1000 genomes]
rs73182301	0.91[EUR][1000 genomes]
rs73183803	0.91[EUR][1000 genomes]
rs73183804	0.91[EUR][1000 genomes]
rs73183808	0.91[EUR][1000 genomes]
rs73183809	0.91[EUR][1000 genomes]
rs73183810	0.91[EUR][1000 genomes]
rs73183814	0.91[EUR][1000 genomes]
rs73183816	0.91[EUR][1000 genomes]
rs73183821	0.91[EUR][1000 genomes]
rs73183822	0.91[EUR][1000 genomes]
rs73183824	0.91[EUR][1000 genomes]
rs73183826	0.91[EUR][1000 genomes]
rs73183827	0.91[EUR][1000 genomes]
rs73183828	0.91[EUR][1000 genomes]
rs73183829	0.91[EUR][1000 genomes]
rs73183830	0.91[EUR][1000 genomes]
rs73183831	0.91[EUR][1000 genomes]
rs73183832	0.91[EUR][1000 genomes]
rs73183833	0.91[EUR][1000 genomes]
rs73183834	0.91[EUR][1000 genomes]
rs73183835	0.91[EUR][1000 genomes]
rs73183836	0.91[EUR][1000 genomes]
rs73183837	0.91[EUR][1000 genomes]
rs73183838	0.91[EUR][1000 genomes]
rs73183840	0.91[EUR][1000 genomes]
rs73183841	0.91[EUR][1000 genomes]
rs73183846	0.91[EUR][1000 genomes]
rs73183848	0.91[EUR][1000 genomes]
rs73183849	0.91[EUR][1000 genomes]
rs73183850	0.91[EUR][1000 genomes]
rs73183851	0.86[EUR][1000 genomes]
rs73183852	0.91[EUR][1000 genomes]
rs73183853	0.91[EUR][1000 genomes]
rs73183854	0.83[EUR][1000 genomes]
rs73183856	0.91[EUR][1000 genomes]
rs73183859	0.91[EUR][1000 genomes]
rs73183860	0.91[EUR][1000 genomes]
rs73183862	0.91[EUR][1000 genomes]
rs73183864	0.91[EUR][1000 genomes]
rs7993497	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv455879	chr13:47919611-48190106	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv561588	chr13:47943829-48190106	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039986	chr13:48081565-48119960	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1043240	chr13:48082916-48119960	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1043473	chr13:48085526-48119960	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv900065	chr13:48106733-48215874	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48114800-48120200	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links