Variant report

Variant	rs2504036
Chromosome Location	chr1:179712480-179712481
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179712115..179713115-chr7:100486907..100487582,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176125	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2487741	0.84[EUR][1000 genomes]
rs2487743	0.80[EUR][1000 genomes]
rs2504044	0.83[EUR][1000 genomes]
rs2504047	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548339	chr1:179686244-179722827	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179711400-179714400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:179711600-179713200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
3	chr1:179711600-179713200	Bivalent Enhancer	Fetal Lung	lung
4	chr1:179711600-179713400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
5	chr1:179711600-179713600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:179711600-179713800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr1:179711600-179713800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:179711600-179713800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
9	chr1:179711600-179714000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr1:179711600-179714000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr1:179711800-179712600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:179711800-179712600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
13	chr1:179711800-179712800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:179711800-179713000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:179711800-179713200	Active TSS	Right Atrium	heart
16	chr1:179711800-179713400	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
17	chr1:179711800-179713400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
18	chr1:179711800-179713600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:179711800-179713600	Bivalent Enhancer	Spleen	Spleen
20	chr1:179711800-179713800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
21	chr1:179711800-179713800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
22	chr1:179711800-179713800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:179711800-179713800	Flanking Bivalent TSS/Enh	Right Ventricle	heart
24	chr1:179711800-179714000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
25	chr1:179711800-179714000	Bivalent Enhancer	Placenta	Placenta
26	chr1:179711800-179714200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr1:179712000-179712600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
28	chr1:179712000-179713000	Bivalent/Poised TSS	A549	lung
29	chr1:179712000-179713200	Bivalent Enhancer	Lung	lung
30	chr1:179712000-179713400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr1:179712000-179713400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
32	chr1:179712000-179713400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:179712000-179713600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:179712000-179713600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:179712000-179713600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr1:179712000-179713600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr1:179712000-179713800	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:179712000-179713800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:179712000-179713800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
40	chr1:179712000-179714000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
41	chr1:179712000-179714000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:179712200-179712600	Flanking Bivalent TSS/Enh	Ovary	ovary
43	chr1:179712200-179712600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
44	chr1:179712200-179712600	Flanking Bivalent TSS/Enh	HMEC	breast
45	chr1:179712200-179712600	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
46	chr1:179712200-179712600	Bivalent/Poised TSS	NH-A	brain
47	chr1:179712200-179712800	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr1:179712200-179713000	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr1:179712200-179713000	Flanking Active TSS	Gastric	stomach
50	chr1:179712200-179713000	Bivalent Enhancer	NHEK	skin

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