Variant report

Variant	rs2504986
Chromosome Location	chr6:77036639-77036640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1038750	0.86[EUR][1000 genomes]
rs10455318	0.88[EUR][1000 genomes]
rs11970502	0.84[EUR][1000 genomes]
rs12194233	0.90[EUR][1000 genomes]
rs12207018	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12527444	0.86[EUR][1000 genomes]
rs13193039	0.91[EUR][1000 genomes]
rs13218458	0.89[EUR][1000 genomes]
rs13218818	0.89[EUR][1000 genomes]
rs1385897	0.86[EUR][1000 genomes]
rs1385898	0.88[EUR][1000 genomes]
rs1387842	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1387843	0.87[EUR][1000 genomes]
rs1387851	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1486043	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1486048	0.91[EUR][1000 genomes]
rs1486050	0.88[EUR][1000 genomes]
rs1486051	0.88[EUR][1000 genomes]
rs1490209	0.85[EUR][1000 genomes]
rs1490210	0.85[EUR][1000 genomes]
rs1490213	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1490220	0.85[EUR][1000 genomes]
rs1532134	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1825653	0.88[EUR][1000 genomes]
rs1843572	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1844553	0.82[EUR][1000 genomes]
rs1960557	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1994334	0.88[EUR][1000 genomes]
rs2029148	0.91[EUR][1000 genomes]
rs2029149	0.91[EUR][1000 genomes]
rs2029150	0.91[EUR][1000 genomes]
rs2101563	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2314706	0.91[EUR][1000 genomes]
rs2314707	0.91[EUR][1000 genomes]
rs2451594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2504634	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2504987	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3123639	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4088862	0.84[EUR][1000 genomes]
rs4267921	0.86[EUR][1000 genomes]
rs4267922	0.87[EUR][1000 genomes]
rs4386775	0.91[EUR][1000 genomes]
rs4493724	0.87[EUR][1000 genomes]
rs4562099	0.91[EUR][1000 genomes]
rs4583941	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4706606	0.88[EUR][1000 genomes]
rs4706607	0.88[EUR][1000 genomes]
rs4706618	0.87[EUR][1000 genomes]
rs4708234	0.88[EUR][1000 genomes]
rs4708235	0.88[EUR][1000 genomes]
rs4708236	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4708267	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5009482	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62430437	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6453899	0.86[EUR][1000 genomes]
rs6453900	0.86[EUR][1000 genomes]
rs6903382	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6907510	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6908025	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6918707	0.86[EUR][1000 genomes]
rs6924853	0.86[EUR][1000 genomes]
rs6928036	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6928328	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7754981	0.87[EUR][1000 genomes]
rs867868	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs923553	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9343382	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9343441	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9343442	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9350626	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9350655	0.87[EUR][1000 genomes]
rs9352276	0.88[EUR][1000 genomes]
rs9352277	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9352278	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9352325	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9352336	0.87[EUR][1000 genomes]
rs9359202	0.86[EUR][1000 genomes]
rs9361057	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9443242	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs9447697	0.86[EUR][1000 genomes]
rs9447698	0.86[EUR][1000 genomes]
rs990578	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1028764	chr6:76870971-77145573	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886191	chr6:76978303-77052331	Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886194	chr6:76999513-77052331	Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv886195	chr6:76999513-77097008	Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1848720	chr6:76999513-77100253	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv437511	chr6:77014509-77040270	Active TSS ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv886199	chr6:77016346-77052331	Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv886201	chr6:77016346-77097008	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1831068	chr6:77016346-77100461	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv520032	chr6:77018159-77052331	Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv886203	chr6:77018159-77052331	Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	esv1828804	chr6:77018159-77100198	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv1830609	chr6:77018159-77100253	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1833338	chr6:77018159-77100461	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv1842856	chr6:77018159-77100461	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv1848102	chr6:77018159-77100461	Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv1816554	chr6:77027034-77100253	ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77036000-77037000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:77036200-77037000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:77036200-77037400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:77036600-77037000	Active TSS	iPS-20b Cell Line	embryonic stem cell

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