Variant report

Variant	rs2506105
Chromosome Location	chr10:43324000-43324001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2506095	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2506097	0.85[ASN][1000 genomes]
rs2506106	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3004290	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55663404	0.85[ASN][1000 genomes]
rs61843370	0.85[ASN][1000 genomes]
rs7082596	0.84[EUR][1000 genomes]
rs7093395	0.85[EUR][1000 genomes]
rs9783200	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv895076	chr10:43234432-43326627	Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
14	esv14695	chr10:43301539-43355457	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:162 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43279800-43324000	Strong transcription	Liver	Liver
2	chr10:43279800-43328200	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:43293200-43332400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:43301800-43325800	Weak transcription	NHLF	lung
5	chr10:43303600-43325800	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:43303600-43332200	Weak transcription	NHDF-Ad	bronchial
7	chr10:43308200-43328200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:43309800-43330000	Weak transcription	Small Intestine	intestine
9	chr10:43310200-43324000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:43310400-43327400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:43311200-43324000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr10:43311200-43329000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:43311400-43329000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:43311600-43324000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:43311600-43328200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:43311800-43324400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr10:43312000-43328400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:43313400-43325200	Weak transcription	HUVEC	blood vessel
19	chr10:43313400-43325600	Weak transcription	Hela-S3	cervix
20	chr10:43313400-43325800	Weak transcription	Fetal Brain Male	brain
21	chr10:43314400-43325400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:43314400-43325600	Weak transcription	Brain Anterior Caudate	brain
23	chr10:43314400-43325800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:43314400-43332200	Weak transcription	Right Atrium	heart
25	chr10:43314600-43325800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:43314600-43329800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr10:43315200-43325400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr10:43315400-43324200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr10:43317000-43324000	Strong transcription	Primary T cells from cord blood	blood
30	chr10:43317200-43324000	Strong transcription	Stomach Smooth Muscle	stomach
31	chr10:43317800-43324200	Strong transcription	Dnd41	blood
32	chr10:43317800-43328200	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:43317800-43328200	Strong transcription	Fetal Intestine Large	intestine
34	chr10:43317800-43328200	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr10:43317800-43328200	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr10:43318000-43324200	Strong transcription	Fetal Muscle Trunk	muscle
37	chr10:43318200-43324000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:43318200-43324000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:43318200-43327200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:43318800-43325800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:43318800-43327000	Weak transcription	HSMM	muscle
42	chr10:43319200-43326400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:43319400-43325400	Weak transcription	HepG2	liver
44	chr10:43319400-43325400	Weak transcription	NH-A	brain
45	chr10:43319400-43325400	Weak transcription	Osteobl	bone
46	chr10:43320000-43324000	Strong transcription	Ovary	ovary
47	chr10:43320000-43325600	Weak transcription	HSMMtube	muscle
48	chr10:43320000-43329000	Weak transcription	Fetal Heart	heart
49	chr10:43320000-43332600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr10:43320400-43324200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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