Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10067774	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030484	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12186639	0.89[EUR][1000 genomes]
rs13157422	0.87[EUR][1000 genomes]
rs13166450	0.81[EUR][1000 genomes]
rs13177258	0.89[EUR][1000 genomes]
rs13179405	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs153312	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1673073	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1963861	0.85[EUR][1000 genomes]
rs2434656	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs250755	0.86[ASN][1000 genomes]
rs250756	0.90[ASN][1000 genomes]
rs250758	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs250760	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs250761	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs250763	0.94[ASN][1000 genomes]
rs250764	0.95[ASN][1000 genomes]
rs250765	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs253085	0.82[AMR][1000 genomes]
rs3925483	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55925929	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56238109	0.87[EUR][1000 genomes]
rs62365101	0.89[EUR][1000 genomes]
rs62365102	0.81[EUR][1000 genomes]
rs62365104	0.89[EUR][1000 genomes]
rs62365105	0.89[EUR][1000 genomes]
rs7712660	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv965590	chr5:76061083-76081416	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv462213	chr5:76067624-76112869	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv598682	chr5:76067624-76112869	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs250754	F2R	cis	Muscle Skeletal	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76061600-76074800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:76070600-76080600	Weak transcription	Fetal Intestine Small	intestine
3	chr5:76074000-76078400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:76074400-76075000	Enhancers	A549	lung
5	chr5:76074400-76075400	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:76074400-76075400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:76074400-76075600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:76074400-76076000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:76074600-76075200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:76074600-76075400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:76074600-76076000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:76074600-76076000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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