Variant report

Variant	rs2507797
Chromosome Location	chr8:102562193-102562194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102557958..102562210-chr8:102562559..102566915,4	K562	blood:
2	chr8:102562014..102564447-chr8:102652332..102655161,2	MCF-7	breast:
3	chr8:102559913..102562210-chr8:102564121..102566915,2	K562	blood:
4	chr8:102552353..102555344-chr8:102561709..102563737,2	MCF-7	breast:
5	chr8:102557913..102561413-chr8:102562095..102566290,5	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16867839	0.82[EUR][1000 genomes]
rs1723751	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1949875	0.83[EUR][1000 genomes]
rs2096554	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs510426	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs541484	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62519112	0.84[EUR][1000 genomes]
rs62519114	0.83[EUR][1000 genomes]
rs62519115	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024652	chr8:101802121-102587124	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
2	nsv539699	chr8:101802121-102587124	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102551400-102577400	Weak transcription	Fetal Stomach	stomach
2	chr8:102552200-102564200	Weak transcription	Esophagus	oesophagus
3	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:102553000-102563000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:102553000-102573600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:102554000-102564600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:102554200-102569000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:102554200-102570600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:102554400-102570400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:102554800-102562600	Strong transcription	NHEK	skin
11	chr8:102555800-102565000	Weak transcription	Pancreas	Pancrea
12	chr8:102556600-102567000	Weak transcription	HMEC	breast
13	chr8:102557200-102564400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:102557200-102564600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:102557200-102564600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr8:102557200-102570600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr8:102557400-102564800	Weak transcription	Placenta	Placenta
18	chr8:102557400-102565200	Weak transcription	Fetal Intestine Large	intestine
19	chr8:102557400-102577400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:102557600-102564600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr8:102557600-102564600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr8:102557600-102570600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:102557800-102562800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr8:102558400-102568200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr8:102558600-102566600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:102559600-102564400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr8:102560800-102569400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:102561200-102564600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:102561600-102562200	Strong transcription	Fetal Intestine Small	intestine
30	chr8:102562000-102562400	Weak transcription	Gastric	stomach
31	chr8:102562000-102563600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links