Variant report

Variant	rs2508759
Chromosome Location	chr11:76233654-76233655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76231800..76233964-chr11:76234838..76236911,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10793169	0.81[EUR][1000 genomes]
rs10793171	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899217	0.80[EUR][1000 genomes]
rs10899222	0.83[EUR][1000 genomes]
rs10899225	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899227	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2508740	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2508741	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2508753	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2508760	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2508761	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2508762	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2513504	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2513505	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2513508	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2513513	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2513520	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2513523	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2513525	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3814711	0.81[EUR][1000 genomes]
rs4245443	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4272809	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4300410	0.81[EUR][1000 genomes]
rs4945090	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5023625	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55977477	0.83[EUR][1000 genomes]
rs7106564	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7107058	0.81[EUR][1000 genomes]
rs8848	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
2	chr11:76184400-76235000	Weak transcription	NHEK	skin
3	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
4	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:76192800-76242800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:76205200-76234200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:76205200-76235800	Weak transcription	NHLF	lung
8	chr11:76205200-76254400	Weak transcription	Aorta	Aorta
9	chr11:76205400-76235800	Weak transcription	Lung	lung
10	chr11:76205400-76240000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:76205400-76254600	Weak transcription	Right Ventricle	heart
12	chr11:76205400-76255200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:76205600-76239200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:76205800-76235800	Weak transcription	Esophagus	oesophagus
15	chr11:76206000-76249200	Weak transcription	Colonic Mucosa	Colon
16	chr11:76207400-76239400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:76207400-76240000	Weak transcription	Brain Substantia Nigra	brain
18	chr11:76207400-76254400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:76207600-76239400	Weak transcription	Brain Angular Gyrus	brain
20	chr11:76208000-76234200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:76208000-76234200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:76208000-76235200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:76208200-76234200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:76208400-76234200	Weak transcription	Brain Anterior Caudate	brain
25	chr11:76212000-76234200	Weak transcription	Thymus	Thymus
26	chr11:76212000-76234400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:76212000-76235200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:76212000-76235400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:76212200-76234200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:76212600-76234200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr11:76212800-76235000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:76213000-76237200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:76213000-76254200	Weak transcription	Fetal Heart	heart
34	chr11:76213200-76234000	Weak transcription	Fetal Brain Male	brain
35	chr11:76213200-76234200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr11:76213200-76235200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:76214400-76234800	Weak transcription	Fetal Intestine Small	intestine
38	chr11:76215800-76234200	Weak transcription	Fetal Muscle Leg	muscle
39	chr11:76218600-76234600	Weak transcription	Brain Germinal Matrix	brain
40	chr11:76219600-76234200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:76219800-76234800	Weak transcription	Fetal Brain Female	brain
42	chr11:76220000-76255600	Weak transcription	Small Intestine	intestine
43	chr11:76220200-76234200	Weak transcription	Fetal Intestine Large	intestine
44	chr11:76220400-76234800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:76221800-76234200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr11:76221800-76234600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:76221800-76235600	Weak transcription	Gastric	stomach
48	chr11:76221800-76235800	Weak transcription	Pancreas	Pancrea
49	chr11:76222000-76234200	Weak transcription	Ovary	ovary
50	chr11:76222200-76234200	Weak transcription	H1 Cell Line	embryonic stem cell

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