Variant report

Variant	rs2508867
Chromosome Location	chr11:71854961-71854962
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:71848622..71850667-chr11:71854281..71856804,2	MCF-7	breast:
2	chr11:71688550..71689500-chr11:71854791..71855728,4	K562	blood:
3	chr11:71817497..71819718-chr11:71852568..71855106,2	MCF-7	breast:
4	chr11:71814410..71815140-chr11:71854813..71855316,2	MCF-7	breast:
5	chr11:71736115..71737039-chr11:71854770..71856004,4	MCF-7	breast:
6	chr11:71726841..71727497-chr11:71854902..71855407,2	MCF-7	breast:
7	chr11:71821717..71826052-chr11:71851780..71856774,7	MCF-7	breast:
8	chr11:71850218..71852679-chr11:71853502..71855781,2	MCF-7	breast:
9	chr11:71853234..71854961-chr11:71893001..71894509,2	MCF-7	breast:
10	chr11:71821644..71823933-chr11:71854873..71856774,3	MCF-7	breast:
11	chr11:71736299..71737011-chr11:71854769..71855288,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000149357	Chromatin interaction
ENSG00000110200	Chromatin interaction
ENSG00000110203	Chromatin interaction
ENSG00000238768	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10751196	0.88[ASN][1000 genomes]
rs2212468	0.81[ASN][1000 genomes]
rs28490487	0.90[ASN][1000 genomes]
rs4630325	0.89[ASN][1000 genomes]
rs490201	0.89[ASN][1000 genomes]
rs550638	0.90[ASN][1000 genomes]
rs555306	0.90[ASN][1000 genomes]
rs575341	0.90[ASN][1000 genomes]
rs575542	0.90[ASN][1000 genomes]
rs590586	0.86[ASN][1000 genomes]
rs59684857	0.89[ASN][1000 genomes]
rs619237	0.83[ASN][1000 genomes]
rs667351	0.86[ASN][1000 genomes]
rs670507	0.86[ASN][1000 genomes]
rs682244	0.90[ASN][1000 genomes]
rs693273	0.85[ASN][1000 genomes]
rs7123197	0.89[ASN][1000 genomes]
rs7949807	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv1054858	chr11:71847797-71880291	Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3493111	chr11:71850822-71893073	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3493112	chr11:71850822-71893073	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv435918	chr11:71851427-71890983	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv5948	chr11:71851479-71890582	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv3359634	chr11:71851533-71892403	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv2513904	chr11:71852934-71892793	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2508867	FOLR3	cis	Whole Blood	GTEx

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71850800-71856200	Enhancers	HMEC	breast
2	chr11:71851200-71856200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:71852800-71855000	Weak transcription	A549	lung
4	chr11:71853000-71856200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:71853200-71855400	Weak transcription	NHLF	lung
6	chr11:71853400-71855000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:71853400-71855200	Weak transcription	NH-A	brain
8	chr11:71853400-71855400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:71853400-71856000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:71853400-71856400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:71853600-71855400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:71853800-71856600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:71854200-71855200	Enhancers	Fetal Thymus	thymus
14	chr11:71854200-71856000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:71854400-71855400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:71854400-71856200	Genic enhancers	NHEK	skin
17	chr11:71854400-71856400	Enhancers	Osteobl	bone
18	chr11:71854400-71857000	Enhancers	Placenta	Placenta
19	chr11:71854600-71855200	Enhancers	Primary hematopoietic stem cells	blood
20	chr11:71854800-71855000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:71854800-71855200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr11:71854800-71855200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:71854800-71855200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:71854800-71855200	Enhancers	Brain Anterior Caudate	brain
25	chr11:71854800-71855200	Enhancers	K562	blood
26	chr11:71854800-71855200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr11:71854800-71855400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr11:71854800-71855400	Enhancers	HSMM	muscle
29	chr11:71854800-71856200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:71854800-71856200	Enhancers	Muscle Satellite Cultured Cells	--
31	chr11:71854800-71856200	Enhancers	NHDF-Ad	bronchial
32	chr11:71854800-71856600	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links