Variant report

Variant	rs2510264
Chromosome Location	chr9:136647053-136647054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136644899..136652439-chr9:136855339..136859914,10	MCF-7	breast:
2	chr9:136647018..136648853-chr9:136824302..136826935,2	MCF-7	breast:
3	chr9:136637048..136639522-chr9:136645040..136647080,2	MCF-7	breast:
4	chr6:137955697..137957262-chr9:136645749..136647474,2	MCF-7	breast:
5	chr9:136642803..136649542-chr9:136652545..136658247,6	MCF-7	breast:
6	chr9:136647007..136648956-chr9:136858795..136860235,12	MCF-7	breast:
7	chr9:136646541..136648587-chr9:136720513..136723174,2	MCF-7	breast:
8	chr9:136223815..136226809-chr9:136645476..136647313,2	K562	blood:
9	chr9:136644385..136647944-chr9:136738272..136741517,4	MCF-7	breast:
10	chr5:137805163..137807257-chr9:136645817..136647864,2	K562	blood:
11	chr9:136397288..136400031-chr9:136646332..136648980,2	K562	blood:
12	chr9:136645262..136664386-chr9:136851810..136861142,57	MCF-7	breast:
13	chr9:136646919..136648935-chr9:136858713..136860466,10	MCF-7	breast:
14	chr9:136647017..136647900-chr9:136964007..136964904,2	K562	blood:
15	chr9:136636638..136643675-chr9:136644136..136648487,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000197859	Chromatin interaction
ENSG00000148291	Chromatin interaction
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10123394	1.00[ASN][1000 genomes]
rs12337369	0.83[ASN][1000 genomes]
rs12337374	0.83[ASN][1000 genomes]
rs12337378	0.83[ASN][1000 genomes]
rs12338774	0.83[ASN][1000 genomes]
rs12342452	0.83[ASN][1000 genomes]
rs12345226	0.83[ASN][1000 genomes]
rs12345332	0.83[ASN][1000 genomes]
rs12555087	0.83[ASN][1000 genomes]
rs35033712	0.83[ASN][1000 genomes]
rs61666944	1.00[ASN][1000 genomes]
rs62576510	0.83[ASN][1000 genomes]
rs62576517	0.83[ASN][1000 genomes]
rs62576518	0.83[ASN][1000 genomes]
rs62576520	0.83[ASN][1000 genomes]
rs7020737	0.83[ASN][1000 genomes]
rs7026263	0.83[ASN][1000 genomes]
rs7026295	0.83[ASN][1000 genomes]
rs7026306	0.83[ASN][1000 genomes]
rs7029488	0.83[ASN][1000 genomes]
rs7033537	0.83[ASN][1000 genomes]
rs7038489	0.83[ASN][1000 genomes]
rs7040637	1.00[ASN][1000 genomes]
rs7046387	1.00[ASN][1000 genomes]
rs7047927	0.83[ASN][1000 genomes]
rs7048365	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894081	chr9:136227260-136678954	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv894086	chr9:136281753-136657960	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv870051	chr9:136459745-136656889	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv894117	chr9:136600201-136716399	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv466622	chr9:136617292-136658816	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv615691	chr9:136617292-136658816	Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv894118	chr9:136624542-136678954	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv894119	chr9:136629399-136657960	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv894120	chr9:136629399-136662638	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv894121	chr9:136629399-136692787	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136624800-136657800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:136633200-136647400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:136633200-136653400	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:136633200-136653600	Weak transcription	Brain Angular Gyrus	brain
5	chr9:136634600-136647400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:136636600-136652200	Strong transcription	HepG2	liver
7	chr9:136636800-136653800	Strong transcription	NHEK	skin
8	chr9:136637400-136653600	Strong transcription	Liver	Liver
9	chr9:136637800-136653200	Weak transcription	Small Intestine	intestine
10	chr9:136638600-136647200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:136638800-136647400	Strong transcription	Placenta Amnion	Placenta Amnion
12	chr9:136639200-136653000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:136639400-136651000	Weak transcription	Brain Anterior Caudate	brain
14	chr9:136639400-136653000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:136639600-136648800	Strong transcription	NHLF	lung
16	chr9:136640000-136651000	Weak transcription	Primary T cells from cord blood	blood
17	chr9:136640000-136651600	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr9:136640000-136652600	Weak transcription	Stomach Mucosa	stomach
19	chr9:136640000-136658000	Weak transcription	Fetal Thymus	thymus
20	chr9:136640000-136679400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:136640200-136652400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:136640200-136653000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:136640200-136658000	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:136640200-136659400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:136640400-136647200	Strong transcription	Lung	lung
26	chr9:136640400-136650400	Strong transcription	Fetal Muscle Leg	muscle
27	chr9:136640400-136650600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:136640400-136651200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:136640400-136652200	Strong transcription	Fetal Intestine Large	intestine
30	chr9:136640400-136652600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:136640400-136653000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:136640400-136682600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr9:136640800-136648000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr9:136640800-136650800	Weak transcription	Fetal Kidney	kidney
35	chr9:136640800-136652200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr9:136640800-136667000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:136641200-136647400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr9:136641200-136651400	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:136641200-136652400	Strong transcription	Fetal Intestine Small	intestine
40	chr9:136641400-136651600	Strong transcription	Fetal Brain Female	brain
41	chr9:136641600-136649600	Weak transcription	NH-A	brain
42	chr9:136641600-136654200	Weak transcription	Right Ventricle	heart
43	chr9:136642000-136651200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr9:136642200-136651000	Weak transcription	A549	lung
45	chr9:136642800-136648000	Weak transcription	Fetal Heart	heart
46	chr9:136642800-136651000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr9:136643000-136651000	Weak transcription	Brain Substantia Nigra	brain
48	chr9:136643000-136658000	Weak transcription	Left Ventricle	heart
49	chr9:136643200-136647800	Weak transcription	Osteobl	bone
50	chr9:136643200-136689800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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