Variant report

Variant	rs251215
Chromosome Location	chr5:127543622-127543623
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10063647	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs10067555	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.87[MEX][hapmap];0.83[ASN][1000 genomes]
rs1105315	0.85[ASN][1000 genomes]
rs251217	0.81[EUR][1000 genomes]
rs251388	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36695	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36696	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36699	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs790153	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.83[MEX][hapmap];0.85[ASN][1000 genomes]
rs790156	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs806100	0.96[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.87[MEX][hapmap]
rs809841	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830482	chr5:127475398-127665377	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs251215	CTC-228N24.3	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127534800-127544200	Weak transcription	Left Ventricle	heart
2	chr5:127537600-127549200	Weak transcription	A549	lung
3	chr5:127537600-127552600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:127543000-127543800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:127543400-127543800	Enhancers	HMEC	breast
6	chr5:127543600-127544000	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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