Variant report

Variant	rs2513821
Chromosome Location	chr8:98931617-98931618
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:98929668..98932562-chr8:98996810..98999331,2	K562	blood:
2	chr8:98929481..98932017-chr8:98944998..98947169,2	MCF-7	breast:
3	chr8:98930453..98932411-chr8:98936573..98938197,2	MCF-7	breast:
4	chr8:98921821..98924732-chr8:98928990..98931932,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10087445	0.91[EUR][1000 genomes]
rs10108176	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12682048	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2290472	0.85[EUR][1000 genomes]
rs2444905	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2512066	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2513820	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28524918	0.91[EUR][1000 genomes]
rs6989895	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1028055	chr8:98780445-98977746	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891214	chr8:98849303-98990399	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv891215	chr8:98910287-98980663	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98925400-98933200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:98925400-98933800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:98926200-98932400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr8:98928200-98933200	Weak transcription	Brain Substantia Nigra	brain
5	chr8:98928800-98931800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:98929200-98944800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:98929400-98934800	Weak transcription	Adipose Nuclei	Adipose
8	chr8:98929600-98932800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:98929600-98935000	Weak transcription	Fetal Kidney	kidney
10	chr8:98929600-98938000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:98929800-98933000	Weak transcription	Brain Anterior Caudate	brain
12	chr8:98929800-98933000	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:98929800-98933200	Weak transcription	Fetal Stomach	stomach
14	chr8:98929800-98936600	Weak transcription	Fetal Lung	lung
15	chr8:98929800-98937800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr8:98930000-98933200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:98930200-98932000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:98930400-98932000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:98930600-98934000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:98930800-98933200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:98930800-98950000	Weak transcription	Right Ventricle	heart
22	chr8:98931000-98931800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr8:98931000-98931800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:98931000-98931800	Weak transcription	Fetal Muscle Leg	muscle
25	chr8:98931000-98933200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:98931000-98933800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:98931000-98934600	Weak transcription	Right Atrium	heart
28	chr8:98931000-98938600	Weak transcription	Placenta	Placenta
29	chr8:98931000-98940800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:98931200-98932200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:98931200-98933000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr8:98931200-98933800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr8:98931200-98934000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr8:98931200-98934000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:98931200-98934800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr8:98931200-98934800	Weak transcription	Osteobl	bone
37	chr8:98931200-98935000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr8:98931200-98935000	Weak transcription	NHDF-Ad	bronchial
39	chr8:98931200-98938000	Weak transcription	NH-A	brain
40	chr8:98931200-98938400	Weak transcription	Left Ventricle	heart
41	chr8:98931200-98944200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr8:98931400-98931800	Weak transcription	Ovary	ovary
43	chr8:98931400-98933800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr8:98931400-98934000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr8:98931400-98934600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr8:98931400-98935000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr8:98931600-98932000	Weak transcription	Pancreas	Pancrea
48	chr8:98931600-98937800	Weak transcription	Fetal Intestine Large	intestine
49	chr8:98931600-98938200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links