Variant report

Variant	rs2513835
Chromosome Location	chr8:98935564-98935565
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:98933138..98936017-chr8:98937438..98939186,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10091886	0.95[CEU][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1020654	1.00[CEU][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1020655	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11996155	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12548243	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1378123	0.96[CEU][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1378124	0.95[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1378125	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1378126	0.96[CEU][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1454714	0.95[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1840370	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1840371	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1840372	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1968721	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2256367	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2444899	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2444900	0.82[EUR][1000 genomes]
rs2444903	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2444904	1.00[CHB][hapmap]
rs2444906	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2512068	1.00[CHB][hapmap]
rs2512072	1.00[CEU][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2513836	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2513837	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2513838	1.00[CEU][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2513839	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2959646	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs4298468	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4469426	0.95[CEU][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4512352	0.95[CEU][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5012370	0.96[CEU][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6468603	0.87[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1028055	chr8:98780445-98977746	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891214	chr8:98849303-98990399	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv891215	chr8:98910287-98980663	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98929200-98944800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:98929600-98938000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:98929800-98936600	Weak transcription	Fetal Lung	lung
4	chr8:98929800-98937800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr8:98930800-98950000	Weak transcription	Right Ventricle	heart
6	chr8:98931000-98938600	Weak transcription	Placenta	Placenta
7	chr8:98931000-98940800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:98931200-98938000	Weak transcription	NH-A	brain
9	chr8:98931200-98938400	Weak transcription	Left Ventricle	heart
10	chr8:98931200-98944200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:98931600-98937800	Weak transcription	Fetal Intestine Large	intestine
12	chr8:98931600-98938200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:98931800-98943200	Enhancers	Fetal Muscle Leg	muscle
14	chr8:98932000-98940800	Weak transcription	Ovary	ovary
15	chr8:98932200-98943400	Weak transcription	Pancreas	Pancrea
16	chr8:98932400-98936400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:98932400-98940600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:98933000-98935800	Enhancers	Brain Cingulate Gyrus	brain
19	chr8:98933000-98936800	Enhancers	Brain Hippocampus Middle	brain
20	chr8:98933200-98935800	Enhancers	Brain Angular Gyrus	brain
21	chr8:98933200-98936400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr8:98934000-98935800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr8:98934000-98937600	Weak transcription	Fetal Stomach	stomach
24	chr8:98934200-98943400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:98934600-98936000	Enhancers	Right Atrium	heart
26	chr8:98934600-98936800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr8:98934600-98938400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:98934800-98935600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:98934800-98935800	Enhancers	Osteobl	bone
30	chr8:98934800-98936200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:98934800-98936400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr8:98934800-98938800	Enhancers	Adipose Nuclei	Adipose
33	chr8:98935000-98936400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:98935000-98936400	Enhancers	NHDF-Ad	bronchial
35	chr8:98935200-98936800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr8:98935200-98937800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:98935200-98941200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr8:98935200-98941200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr8:98935200-98944400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr8:98935400-98937200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:98935400-98937800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:98935400-98937800	Weak transcription	Fetal Intestine Small	intestine
43	chr8:98935400-98937800	Weak transcription	Fetal Kidney	kidney
44	chr8:98935400-98938000	Weak transcription	Brain Substantia Nigra	brain
45	chr8:98935400-98938200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr8:98935400-98941200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr8:98935400-98941200	Weak transcription	Brain Anterior Caudate	brain

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