Variant report

Variant	rs2513903
Chromosome Location	chr8:103802844-103802845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33377872..33378441-chr8:103802745..103803501,2	Hela-S3	cervix:
2	chr8:101733166..101734716-chr8:103800912..103802886,2	K562	blood:
3	chr8:103801172..103803123-chr8:103875000..103876524,2	MCF-7	breast:
4	chr8:103779903..103782646-chr8:103802643..103805318,2	MCF-7	breast:
5	chr8:103775938..103779802-chr8:103800388..103802850,3	MCF-7	breast:
6	chr8:103768552..103771616-chr8:103798960..103803059,6	MCF-7	breast:
7	chr8:103664425..103672321-chr8:103786823..103809844,55	MCF-7	breast:
8	chr8:103610542..103615201-chr8:103799392..103803025,12	MCF-7	breast:
9	chr8:103766897..103768653-chr8:103801349..103802908,2	MCF-7	breast:
10	chr8:103742926..103745832-chr8:103801175..103802860,2	MCF-7	breast:
11	chr8:103793293..103798105-chr8:103798745..103802952,14	MCF-7	breast:
12	chr8:103797903..103806624-chr8:103818327..103823736,14	K562	blood:
13	chr8:103656072..103671156-chr8:103783158..103810200,133	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction
ENSG00000112511	Chromatin interaction
ENSG00000155090	Chromatin interaction
ENSG00000155096	Chromatin interaction
ENSG00000070756	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2436870	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2513902	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2513905	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1814245	chr8:103735804-103824566	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv519814	chr8:103778809-103806914	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103795200-103804400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:103795600-103803000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:103798400-103804200	Enhancers	Placenta	Placenta
4	chr8:103798600-103804200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:103798800-103808600	Enhancers	Fetal Muscle Leg	muscle
6	chr8:103799000-103803800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:103799000-103803800	Enhancers	Left Ventricle	heart
8	chr8:103799000-103804000	Enhancers	Right Atrium	heart
9	chr8:103799000-103804000	Enhancers	HSMMtube	muscle
10	chr8:103799000-103804200	Enhancers	Colon Smooth Muscle	Colon
11	chr8:103799000-103804200	Enhancers	HSMM	muscle
12	chr8:103799200-103804200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:103799400-103811200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr8:103799600-103811000	Enhancers	Primary hematopoietic stem cells	blood
15	chr8:103799800-103803000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr8:103799800-103803800	Enhancers	Primary B cells from cord blood	blood
17	chr8:103799800-103803800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:103799800-103803800	Enhancers	Stomach Mucosa	stomach
19	chr8:103799800-103803800	Enhancers	HUVEC	blood vessel
20	chr8:103799800-103804000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:103799800-103804000	Enhancers	Fetal Lung	lung
22	chr8:103799800-103804200	Enhancers	Fetal Heart	heart
23	chr8:103799800-103804200	Enhancers	Fetal Intestine Large	intestine
24	chr8:103799800-103804200	Enhancers	Fetal Intestine Small	intestine
25	chr8:103799800-103804200	Enhancers	Fetal Stomach	stomach
26	chr8:103799800-103804200	Enhancers	NHLF	lung
27	chr8:103799800-103804600	Enhancers	HMEC	breast
28	chr8:103799800-103805000	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr8:103800000-103803800	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr8:103800000-103804000	Enhancers	NH-A	brain
31	chr8:103800000-103804200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr8:103800000-103804200	Enhancers	Placenta Amnion	Placenta Amnion
33	chr8:103800000-103804200	Enhancers	NHDF-Ad	bronchial
34	chr8:103800000-103804200	Enhancers	NHEK	skin
35	chr8:103800200-103803600	Enhancers	GM12878-XiMat	blood
36	chr8:103800200-103803800	Enhancers	Duodenum Mucosa	Duodenum
37	chr8:103800200-103803800	Enhancers	Pancreas	Pancrea
38	chr8:103800200-103804000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:103800200-103804200	Enhancers	Fetal Thymus	thymus
40	chr8:103800200-103804800	Enhancers	Psoas Muscle	Psoas
41	chr8:103800200-103807400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:103800400-103803800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr8:103800400-103804000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:103800400-103804200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr8:103800400-103804400	Enhancers	Fetal Muscle Trunk	muscle
46	chr8:103800800-103803800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr8:103800800-103804600	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr8:103801000-103804200	Enhancers	Primary T cells from cord blood	blood
49	chr8:103801200-103803600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr8:103801200-103804200	Enhancers	Duodenum Smooth Muscle	Duodenum

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