Variant report

Variant	rs2515113
Chromosome Location	chr8:95319741-95319742
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95303286..95305452-chr8:95318585..95320477,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2256744	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2256748	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2445700	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2445703	0.83[EUR][1000 genomes]
rs2445729	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2445730	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2445731	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2448919	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2470714	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2470715	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2470716	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2515096	0.82[EUR][1000 genomes]
rs2515118	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2515123	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2515124	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2515131	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2515133	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2515136	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2515167	0.83[EUR][1000 genomes]
rs981616	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95316400-95320000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:95316400-95321000	Weak transcription	HSMM	muscle
3	chr8:95316400-95321600	Weak transcription	Adipose Nuclei	Adipose
4	chr8:95316600-95322200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:95316800-95322600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:95317000-95322400	Weak transcription	HMEC	breast
7	chr8:95318000-95321600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:95318800-95324400	Enhancers	Rectal Smooth Muscle	rectum
9	chr8:95319000-95320200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:95319000-95320200	Enhancers	Stomach Smooth Muscle	stomach
11	chr8:95319000-95320600	Enhancers	Colon Smooth Muscle	Colon
12	chr8:95319000-95322000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:95319200-95320400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:95319200-95320600	Enhancers	NHDF-Ad	bronchial
15	chr8:95319400-95320200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:95319400-95320200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:95319400-95320200	Enhancers	NH-A	brain
18	chr8:95319400-95320200	Enhancers	Osteobl	bone
19	chr8:95319400-95320400	Enhancers	A549	lung
20	chr8:95319400-95320600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:95319600-95320200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:95319600-95320200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr8:95319600-95320200	Enhancers	NHLF	lung

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