Variant report

Variant	rs2515391
Chromosome Location	chr2:113815997-113815998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113808741..113811211-chr2:113813910..113818157,4	K562	blood:
2	chr2:113815604..113817991-chr2:113819036..113821911,2	K562	blood:
3	chr2:113815048..113817991-chr2:113819572..113821911,4	K562	blood:

Variant related genes	Relation type
ENSG00000136696	Chromatin interaction
ENSG00000136695	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10206428	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11123158	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12475161	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1374285	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1374286	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1530548	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1530550	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1530551	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1530552	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1530553	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1800930	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2251872	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2251876	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2252007	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2441375	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2441376	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2472187	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2472188	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515392	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2515394	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2515395	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2515396	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2515397	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2515398	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2515399	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2515401	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515402	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515403	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3180234	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3180235	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4849146	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6733859	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6748448	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs768627	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs957201	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv2881	chr2:113800805-113846597	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2515391	IL36B	cis	Esophagus Mucosa	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113814200-113816200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:113814600-113818400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:113815200-113816200	Weak transcription	Placenta	Placenta
4	chr2:113815800-113817400	Enhancers	NHEK	skin

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