Variant report

Variant	rs2518115
Chromosome Location	chr9:108319114-108319115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108311203..108313649-chr9:108317166..108319459,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2518121	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893692	chr9:108218852-108320988	ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv1049133	chr9:108292302-108356068	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108282400-108319800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:108282400-108319800	Weak transcription	Left Ventricle	heart
3	chr9:108282400-108319800	Weak transcription	Psoas Muscle	Psoas
4	chr9:108282600-108319800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:108292600-108319800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:108293800-108319800	Weak transcription	Liver	Liver
7	chr9:108294800-108319800	Weak transcription	Hela-S3	cervix
8	chr9:108295600-108319800	Weak transcription	Aorta	Aorta
9	chr9:108297600-108319800	Weak transcription	NHLF	lung
10	chr9:108297800-108319200	Weak transcription	Dnd41	blood
11	chr9:108297800-108319800	Weak transcription	Adipose Nuclei	Adipose
12	chr9:108298000-108319800	Weak transcription	NHDF-Ad	bronchial
13	chr9:108298800-108319800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:108301000-108319800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:108301400-108319800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr9:108302200-108319800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:108304400-108319800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:108305000-108319800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:108305800-108319200	Weak transcription	GM12878-XiMat	blood
20	chr9:108305800-108319800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:108307200-108319800	Weak transcription	Ovary	ovary
22	chr9:108309000-108319800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:108309200-108319600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:108309200-108319800	Weak transcription	HMEC	breast
25	chr9:108309400-108319800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:108309600-108319800	Weak transcription	A549	lung
27	chr9:108310400-108319400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:108312000-108319800	Weak transcription	HSMM	muscle
29	chr9:108312000-108319800	Weak transcription	NH-A	brain
30	chr9:108313400-108319800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:108317400-108320000	Weak transcription	Gastric	stomach
32	chr9:108318400-108319800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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