Variant report

Variant	rs2520346
Chromosome Location	chr7:18847958-18847959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10266741	0.80[ASN][1000 genomes]
rs12540265	0.80[ASN][1000 genomes]
rs17349622	1.00[YRI][hapmap]
rs2028016	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs2073962	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs2078866	0.81[ASN][1000 genomes]
rs2588600	0.81[CHB][hapmap]
rs2588625	0.81[ASN][1000 genomes]
rs2588627	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs2588634	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs3855596	0.81[ASN][1000 genomes]
rs4721725	0.84[CHB][hapmap]
rs6972422	1.00[YRI][hapmap]
rs6972607	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs7782894	0.81[ASN][1000 genomes]
rs7783209	0.81[ASN][1000 genomes]
rs7801849	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18844000-18858000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:18847200-18848000	Enhancers	HMEC	breast
3	chr7:18847400-18848000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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