Variant report

Variant	rs252077
Chromosome Location	chr5:16725449-16725450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16723686..16725760-chr5:16727885..16730861,2	MCF-7	breast:
2	chr5:16723548..16725058-chr5:16725138..16727326,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs173738	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv880373	chr5:16710572-16785604	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16682400-16736000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:16711200-16736400	Weak transcription	Hela-S3	cervix
3	chr5:16711400-16727800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:16711400-16728200	Weak transcription	Spleen	Spleen
5	chr5:16711400-16730200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:16711400-16731800	Weak transcription	HMEC	breast
7	chr5:16711600-16736000	Weak transcription	Placenta	Placenta
8	chr5:16713800-16731600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:16713800-16735600	Weak transcription	Colonic Mucosa	Colon
10	chr5:16714000-16726200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:16714000-16726200	Weak transcription	Left Ventricle	heart
12	chr5:16714000-16730200	Weak transcription	Osteobl	bone
13	chr5:16714200-16726200	Weak transcription	Fetal Kidney	kidney
14	chr5:16714200-16730400	Weak transcription	NHLF	lung
15	chr5:16714200-16736000	Weak transcription	NHDF-Ad	bronchial
16	chr5:16714400-16730000	Weak transcription	NH-A	brain
17	chr5:16714600-16726400	Weak transcription	Brain Substantia Nigra	brain
18	chr5:16714600-16728200	Weak transcription	Psoas Muscle	Psoas
19	chr5:16721400-16725800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:16721600-16725600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:16722000-16726000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr5:16722200-16730200	Weak transcription	Stomach Mucosa	stomach
23	chr5:16722200-16734200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:16722400-16725600	Weak transcription	HSMM	muscle
25	chr5:16722400-16726000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr5:16722400-16726200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:16722400-16726200	Weak transcription	HSMMtube	muscle
28	chr5:16722400-16726400	Weak transcription	Gastric	stomach
29	chr5:16722400-16726800	Weak transcription	Brain Hippocampus Middle	brain
30	chr5:16722400-16728000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr5:16722400-16728000	Weak transcription	Brain Angular Gyrus	brain
32	chr5:16722400-16728000	Weak transcription	Lung	lung
33	chr5:16722400-16728000	Weak transcription	Pancreas	Pancrea
34	chr5:16722400-16728200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:16722400-16729800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr5:16722400-16730000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr5:16722400-16730000	Weak transcription	NHEK	skin
38	chr5:16722400-16730200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:16722400-16734000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:16722600-16726200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr5:16722600-16726200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr5:16722600-16726600	Weak transcription	Fetal Brain Female	brain
43	chr5:16722600-16727800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr5:16722600-16728200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr5:16722600-16736000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr5:16722800-16726200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr5:16722800-16726200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr5:16722800-16726200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr5:16722800-16727800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:16722800-16728000	Weak transcription	HepG2	liver

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