Variant report

Variant rs2522828
Chromosome Location chr7:27143757-27143758
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:27137000-27146800 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr7:27137600-27149000 Weak transcription HepG2 liver
3 chr7:27138000-27144200 Bivalent/Poised TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr7:27138000-27144800 Weak transcription A549 lung
5 chr7:27140200-27143800 Active TSS Rectal Mucosa Donor 29 rectum
6 chr7:27140200-27144200 Active TSS Aorta Aorta
7 chr7:27140200-27144800 Flanking Active TSS HUVEC blood vessel
8 chr7:27140400-27143800 Bivalent/Poised TSS Duodenum Mucosa Duodenum
9 chr7:27140400-27143800 Active TSS Esophagus oesophagus
10 chr7:27140400-27144200 Active TSS Colon Smooth Muscle Colon
11 chr7:27140600-27143800 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr7:27140600-27144200 Active TSS Rectal Smooth Muscle rectum
13 chr7:27140800-27143800 Active TSS Psoas Muscle Psoas
14 chr7:27140800-27144200 Active TSS Right Atrium heart
15 chr7:27141000-27143800 Active TSS Placenta Amnion Placenta Amnion
16 chr7:27141000-27145600 Weak transcription Muscle Satellite Cultured Cells --
17 chr7:27141400-27143800 Active TSS Stomach Mucosa stomach
18 chr7:27141400-27144200 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
19 chr7:27141400-27144400 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
20 chr7:27141400-27145400 Weak transcription HSMMtube muscle
21 chr7:27141400-27146000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr7:27141400-27146000 Weak transcription HSMM muscle
23 chr7:27141600-27144000 Weak transcription Osteobl bone
24 chr7:27141600-27144200 Enhancers Spleen Spleen
25 chr7:27141600-27144400 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
26 chr7:27141600-27144400 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
27 chr7:27142000-27143800 Flanking Active TSS NHEK skin
28 chr7:27142200-27144000 Flanking Active TSS HMEC breast
29 chr7:27142400-27143800 Flanking Active TSS Rectal Mucosa Donor 31 rectum
30 chr7:27142400-27144600 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
31 chr7:27142400-27144600 Flanking Active TSS NHLF lung
32 chr7:27142400-27146000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr7:27142600-27143800 Bivalent Enhancer ES-UCSF4 Cell Line embryonic stem cell
34 chr7:27142600-27143800 Bivalent Enhancer Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr7:27142600-27143800 Flanking Bivalent TSS/Enh Fetal Adrenal Gland Adrenal Gland
36 chr7:27142600-27143800 Bivalent/Poised TSS Fetal Intestine Large intestine
37 chr7:27142600-27147600 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr7:27142800-27149000 Weak transcription NHDF-Ad bronchial
39 chr7:27143200-27143800 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr7:27143200-27146000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr7:27143400-27143800 Flanking Active TSS Adipose Nuclei Adipose
42 chr7:27143400-27143800 Flanking Bivalent TSS/Enh Fetal Intestine Small intestine
43 chr7:27143400-27143800 Flanking Bivalent TSS/Enh NH-A brain
44 chr7:27143400-27144200 Flanking Bivalent TSS/Enh Fetal Lung lung
45 chr7:27143600-27143800 Flanking Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr7:27143600-27143800 Bivalent Enhancer hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr7:27143600-27143800 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr7:27143600-27143800 Flanking Active TSS Fetal Muscle Trunk muscle
49 chr7:27143600-27144000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr7:27143600-27144000 Weak transcription Lung lung

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