Variant report

Variant	rs2523184
Chromosome Location	chr7:79805005-79805006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10230368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10257372	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10272499	0.84[CEU][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10277707	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12671775	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12706673	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1468242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2428466	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2428467	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2523192	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2714457	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2714460	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4512317	0.88[CEU][hapmap];0.85[CHB][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6945280	0.84[CEU][hapmap];0.80[CHB][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6956455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7808119	0.89[CEU][hapmap];0.80[CHB][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79783800-79806600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:79789400-79814200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:79792800-79809000	Weak transcription	Fetal Kidney	kidney
4	chr7:79795400-79816000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:79795600-79809000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:79796400-79816000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:79799800-79805400	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:79800800-79806800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:79801600-79805200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:79801800-79840400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:79802400-79813200	Weak transcription	Placenta	Placenta
12	chr7:79802600-79805200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:79802600-79805600	Weak transcription	Gastric	stomach
14	chr7:79802600-79806600	Weak transcription	NHDF-Ad	bronchial
15	chr7:79802600-79807000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:79802600-79809000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:79802600-79820200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:79802800-79805600	Weak transcription	Primary T cells from cord blood	blood
19	chr7:79803000-79807200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:79803200-79806800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr7:79803200-79806800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr7:79803200-79806800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:79803200-79806800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:79803200-79806800	Weak transcription	Brain Angular Gyrus	brain
25	chr7:79803200-79807000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:79803200-79812000	Weak transcription	NHEK	skin
27	chr7:79803200-79812200	Weak transcription	Ovary	ovary
28	chr7:79803400-79806800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr7:79803400-79806800	Weak transcription	Adipose Nuclei	Adipose
30	chr7:79803400-79806800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:79803400-79807000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:79803400-79810000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr7:79803400-79811800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:79803400-79812000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr7:79804400-79805400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:79804400-79807200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr7:79804800-79806000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:79804800-79813200	Weak transcription	Left Ventricle	heart
39	chr7:79805000-79805400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:79805000-79805400	Enhancers	Fetal Lung	lung
41	chr7:79805000-79806800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links