Variant report

Variant	rs2523462
Chromosome Location	chr6:31364692-31364693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:31364660-31364930	HEK293	kidney:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
2	CTCF	chr6:31364610-31365193	A549	lung:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
3	RAD21	chr6:31364614-31365063	ECC-1	luminal epithelium:	n/a	chr6:31364875-31364884 chr6:31364874-31364893
4	CTCF	chr6:31364640-31364790	HFF-Myc	foreskin:	n/a	n/a
5	CTCF	chr6:31364630-31365112	K562	blood:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
6	CTCF	chr6:31364519-31365274	SK-N-SH	brain:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
7	SMC3	chr6:31364522-31365263	SK-N-SH	brain:	n/a	chr6:31364875-31364889
8	CTCF	chr6:31364681-31365081	IMR90	lung:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
9	POU2F2	chr6:31364538-31365211	GM12878	blood:	n/a	chr6:31365130-31365142 chr6:31364938-31364952
10	CTCF	chr6:31364561-31365138	K562	blood:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
11	CTCF	chr6:31364581-31365124	A549	lung:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
12	RAD21	chr6:31364635-31365076	A549	lung:	n/a	chr6:31364875-31364884 chr6:31364874-31364893
13	PAX5	chr6:31364550-31365131	GM12878	blood:	n/a	n/a
14	CTCF	chr6:31364668-31365036	A549	lung:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
15	RAD21	chr6:31364530-31365192	SK-N-SH	brain:	n/a	chr6:31364875-31364884 chr6:31364874-31364893
16	RAD21	chr6:31364649-31365168	MCF-7	breast:	n/a	chr6:31364875-31364884 chr6:31364874-31364893
17	RAD21	chr6:31364626-31365147	HCT-116	colon:	n/a	chr6:31364875-31364884 chr6:31364874-31364893
18	RUNX3	chr6:31364604-31365050	GM12878	blood:	n/a	n/a
19	POLR2A	chr6:31364672-31365248	PANC-1	pancreas:	n/a	n/a
20	CEBPB	chr6:31364595-31364963	Hela-S3	cervix:	n/a	n/a
21	CTCF	chr6:31364666-31365026	HepG2	liver:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
22	CTCF	chr6:31364640-31364790	HFF	foreskin:	n/a	n/a
23	RUNX3	chr6:31364681-31365053	GM12878	blood:	n/a	n/a
24	RAD21	chr6:31364684-31365006	HepG2	liver:	n/a	chr6:31364875-31364884 chr6:31364874-31364893
25	CTCF	chr6:31364673-31364982	A549	lung:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
26	CTCF	chr6:31364661-31365055	H1-hESC	embryonic stem cell:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
27	CTCF	chr6:31364649-31365087	MCF-7	breast:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
28	CTCF	chr6:31364640-31364790	HCM	heart:	n/a	n/a
29	YY1	chr6:31364649-31364905	K562	blood:	n/a	n/a
30	SMC3	chr6:31364691-31365086	GM12878	blood:	n/a	chr6:31364875-31364889
31	CTCF	chr6:31364633-31365097	K562	blood:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
32	CTCF	chr6:31364451-31365167	HCT-116	colon:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
33	CTCF	chr6:31364605-31365088	MCF-7	breast:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
34	CTCF	chr6:31364680-31364830	HAc	cerebellar:	n/a	n/a
35	SMC3	chr6:31364683-31365103	Hela-S3	cervix:	n/a	chr6:31364875-31364889
36	CTCF	chr6:31364640-31364790	A549	lung:	n/a	n/a
37	CTCF	chr6:31364659-31365129	HepG2	liver:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
38	RAD21	chr6:31364609-31365144	HepG2	liver:	n/a	chr6:31364875-31364884 chr6:31364874-31364893
39	CTCF	chr6:31364677-31365092	GM12878	blood:	n/a	chr6:31364873-31364891 chr6:31364877-31364884 chr6:31364875-31364896
40	EP300	chr6:31364654-31364940	K562	blood:	n/a	n/a
41	RAD21	chr6:31364660-31365134	A549	lung:	n/a	chr6:31364875-31364884 chr6:31364874-31364893
42	RAD21	chr6:31364679-31365098	ECC-1	luminal epithelium:	n/a	chr6:31364875-31364884 chr6:31364874-31364893
43	MAX	chr6:31364654-31365040	K562	blood:	n/a	n/a
44	RAD21	chr6:31364676-31365143	MCF-7	breast:	n/a	chr6:31364875-31364884 chr6:31364874-31364893
45	USF2	chr6:31364614-31365063	Hela-S3	cervix:	n/a	n/a
46	RAD21	chr6:31364547-31365091	HCT-116	colon:	n/a	chr6:31364875-31364884 chr6:31364874-31364893
47	CTCF	chr6:31364660-31364810	HCPEpiC	choroid plexus:	n/a	n/a
48	CTCF	chr6:31364660-31364810	HPAF	blood vessel:	n/a	n/a
49	IRF4	chr6:31364647-31365117	GM12878	blood:	n/a	n/a
50	RAD21	chr6:31364613-31365113	H1-hESC	embryonic stem cell:	n/a	chr6:31364875-31364884 chr6:31364874-31364893

No.	Distal block	Cell Line	Cell type
1	chr6:31364576..31367331-chr6:31369349..31372299,2	MCF-7	breast:
2	chr6:31364332..31365182-chr6:31410773..31411326,2	MCF-7	breast:
3	chr6:31363916..31365693-chr6:31369215..31371769,3	K562	blood:
4	chr6:31364571..31365539-chr6:31409150..31410099,3	K562	blood:
5	chr6:31364413..31365395-chr6:31409114..31409825,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272221	TF binding region
HCP5	TF binding region
ENSG00000204520	Chromatin interaction
ENSG00000199332	Chromatin interaction
ENSG00000230174	Chromatin interaction

Extended variants
information (count: 309 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16899524	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263313	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2428476	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2428482	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2516447	0.81[ASN][1000 genomes]
rs2523450	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523472	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523476	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2523477	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2523498	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596537	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596539	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366113	0.81[ASN][1000 genomes]
rs28366116	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28366120	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28366121	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28366122	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28366134	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366135	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366143	0.80[AMR][1000 genomes]
rs2854000	0.82[ASN][1000 genomes]
rs2857281	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2905708	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094590	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3880459	0.81[ASN][1000 genomes]
rs9295989	0.81[ASN][1000 genomes]
rs9295990	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:282 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
6	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
7	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
8	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
9	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
10	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
11	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
12	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
13	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
15	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
16	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
17	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
18	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
19	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
20	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
21	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
22	nsv1029526	chr6:31256354-31449207	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
23	nsv538181	chr6:31256354-31449207	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
24	nsv1029508	chr6:31269776-31445712	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
25	nsv538182	chr6:31269776-31445712	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
26	esv1830805	chr6:31269777-31450100	Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
27	esv33563	chr6:31275505-31453668	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
28	nsv601570	chr6:31276751-31451476	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
29	nsv538184	chr6:31277798-31445712	Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
30	nsv1029678	chr6:31279535-31449207	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
31	nsv538185	chr6:31279535-31449207	Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
32	nsv1022451	chr6:31279535-31485736	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
33	nsv601608	chr6:31280101-31389784	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
34	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
35	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
36	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
37	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
38	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
39	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
40	nsv601660	chr6:31281770-31451476	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
41	nsv538186	chr6:31282952-31445712	Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
42	nsv869722	chr6:31287397-31461074	Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
43	nsv884319	chr6:31308988-31430721	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
44	esv3491002	chr6:31310527-31398831	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
45	esv3491003	chr6:31310527-31398831	Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
46	esv1828258	chr6:31316612-31456605	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
47	nsv538187	chr6:31325961-31445712	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
48	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
49	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
50	nsv1033646	chr6:31328826-31365869	Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31345800-31367400	Weak transcription	Gastric	stomach
2	chr6:31350200-31367400	Weak transcription	Aorta	Aorta
3	chr6:31351000-31366000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:31352000-31367400	Weak transcription	Pancreas	Pancrea
5	chr6:31353600-31366600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:31354800-31365000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:31354800-31366800	Weak transcription	HSMM	muscle
8	chr6:31355800-31364800	Weak transcription	Liver	Liver
9	chr6:31359000-31367000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:31360200-31366600	Weak transcription	Primary B cells from cord blood	blood
11	chr6:31360200-31367400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:31360400-31364800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:31360400-31367200	Weak transcription	Thymus	Thymus
14	chr6:31361000-31367200	Weak transcription	Psoas Muscle	Psoas
15	chr6:31361400-31365000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:31361800-31367000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:31362000-31365000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:31362000-31367000	Weak transcription	Colonic Mucosa	Colon
19	chr6:31362000-31367400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:31362600-31365800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:31363000-31365800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:31363200-31367400	Weak transcription	Esophagus	oesophagus
23	chr6:31363400-31365200	Flanking Active TSS	K562	blood
24	chr6:31363400-31367400	Weak transcription	Lung	lung
25	chr6:31363600-31366600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:31363800-31365200	Enhancers	Fetal Heart	heart
27	chr6:31363800-31366000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:31363800-31366400	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr6:31364000-31365200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:31364000-31365200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:31364000-31365200	Enhancers	Osteobl	bone
32	chr6:31364000-31365600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:31364000-31365800	Enhancers	NHLF	lung
34	chr6:31364000-31366000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:31364000-31367000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr6:31364000-31367600	Weak transcription	Spleen	Spleen
37	chr6:31364200-31364800	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr6:31364200-31364800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:31364200-31365000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:31364200-31365000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:31364200-31365200	Enhancers	Fetal Thymus	thymus
42	chr6:31364200-31365200	Flanking Active TSS	HUVEC	blood vessel
43	chr6:31364200-31365600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:31364200-31365800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:31364200-31366000	Weak transcription	Left Ventricle	heart
46	chr6:31364200-31366000	Weak transcription	Ovary	ovary
47	chr6:31364200-31367200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr6:31364200-31367200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:31364200-31367200	Enhancers	GM12878-XiMat	blood
50	chr6:31364200-31367400	Enhancers	Primary T cells fromperipheralblood	blood

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