Variant report

Variant	rs2523507
Chromosome Location	chr6:31509355-31509356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:363)
CpG islands
(count:61)
Chromatin interactive
region (count:50)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:363 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:31508687-31511132	K562	blood:	n/a	n/a
2	POLR2A	chr6:31508592-31510388	K562	blood:	n/a	n/a
3	PML	chr6:31508762-31510519	K562	blood:	n/a	n/a
4	TAF1	chr6:31509322-31509979	Hela-S3	cervix:	n/a	n/a
5	YY1	chr6:31508832-31510410	ECC-1	luminal epithelium:	n/a	chr6:31509513-31509530
6	GTF2F1	chr6:31508890-31510549	Hela-S3	cervix:	n/a	n/a
7	GTF2F1	chr6:31509088-31510370	K562	blood:	n/a	n/a
8	MXI1	chr6:31508916-31510404	HepG2	liver:	n/a	n/a
9	EGR1	chr6:31509330-31510013	MCF-7	breast:	n/a	n/a
10	FOXM1	chr6:31508540-31510464	GM12878	blood:	n/a	n/a
11	ATF2	chr6:31509236-31510314	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr6:31508792-31510564	HL-60	blood:	n/a	n/a
13	SMARCB1	chr6:31509059-31510681	Hela-S3	cervix:	n/a	chr6:31510356-31510365
14	POLR2A	chr6:31508794-31510480	H1-hESC	embryonic stem cell:	n/a	n/a
15	HEY1	chr6:31508988-31510437	HepG2	liver:	n/a	n/a
16	POLR2A	chr6:31508882-31510438	NB4	blood:	n/a	n/a
17	GTF2F1	chr6:31509025-31510399	H1-hESC	embryonic stem cell:	n/a	n/a
18	TAF1	chr6:31508861-31510482	ECC-1	luminal epithelium:	n/a	n/a
19	MAX	chr6:31508766-31510836	K562	blood:	n/a	n/a
20	TAF1	chr6:31508842-31510533	PFSK-1	brain:	n/a	n/a
21	POLR2A	chr6:31509329-31510437	GM18526	blood:	n/a	n/a
22	MXI1	chr6:31508889-31510468	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr6:31509022-31510422	GM18951	blood:	n/a	n/a
24	RUNX3	chr6:31508824-31510376	GM12878	blood:	n/a	n/a
25	SP4	chr6:31509123-31510423	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr6:31508618-31511594	HepG2	liver:	n/a	n/a
27	RELA	chr6:31508837-31510392	GM12891	blood:	n/a	n/a
28	CHD2	chr6:31508906-31510350	GM12878	blood:	n/a	n/a
29	MTA3	chr6:31508398-31510639	GM12878	blood:	n/a	n/a
30	MYC	chr6:31509058-31510385	H1-hESC	embryonic stem cell:	n/a	n/a
31	GABPA	chr6:31509006-31510444	A549	lung:	n/a	n/a
32	MAX	chr6:31509222-31510556	MCF-7	breast:	n/a	n/a
33	POLR2A	chr6:31508784-31510863	K562	blood:	n/a	n/a
34	CTCF	chr6:31509280-31509430	BE2_C	brain:	n/a	n/a
35	MAX	chr6:31508860-31510461	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr6:31508782-31510412	H1-hESC	embryonic stem cell:	n/a	n/a
37	NR2F2	chr6:31508782-31510507	K562	blood:	n/a	n/a
38	POU2F2	chr6:31508830-31510488	GM12878	blood:	n/a	n/a
39	REST	chr6:31508984-31510329	H1-neurons	neurons:	n/a	n/a
40	POLR2A	chr6:31509102-31509928	SK-N-SH	brain:	n/a	n/a
41	FOSL2	chr6:31509122-31509996	A549	lung:	n/a	n/a
42	MAX	chr6:31508894-31510431	SK-N-SH	brain:	n/a	n/a
43	RELA	chr6:31509020-31510383	GM19193	blood:	n/a	n/a
44	POLR2A	chr6:31508724-31510477	HepG2	liver:	n/a	n/a
45	POLR2A	chr6:31508848-31510420	GM12891	blood:	n/a	n/a
46	POLR2A	chr6:31508818-31510519	GM12878	blood:	n/a	n/a
47	ATF2	chr6:31509255-31510300	GM12878	blood:	n/a	n/a
48	USF2	chr6:31509067-31510292	Hela-S3	cervix:	n/a	n/a
49	MXI1	chr6:31508890-31510439	GM12878	blood:	n/a	n/a
50	HA-E2F1	chr6:31509231-31510577	MCF-7	breast:	n/a	chr6:31509745-31509756 chr6:31509817-31509828

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31509352-31509402	SK-N-MC	brain:	n/a
2	chr6:31509352-31509402	Hepatocyte	liver:	n/a
3	chr6:31509352-31509402	AG09319	gingival:	n/a
4	chr6:31509352-31509402	NT2-D1	testis:	n/a
5	chr6:31509352-31509402	BJ	skin:	n/a
6	chr6:31509352-31509402	SKMC	muscle:	n/a
7	chr6:31509352-31509402	GM12892	blood:	n/a
8	chr6:31509352-31509402	MCF-7	breast:	n/a
9	chr6:31509352-31509402	HCM	heart:	n/a
10	chr6:31509352-31509402	NB4	blood:	n/a
11	chr6:31509352-31509402	AG04450	lung:	fetal
12	chr6:31509352-31509402	AG04449	skin:	fetal
13	chr6:31509352-31509402	HMEC	breast:	n/a
14	chr6:31509352-31509402	HRE	kidney:	n/a
15	chr6:31509352-31509402	NHBE	bronchial:	n/a
16	chr6:31509352-31509402	IMR90	lung:	fetal
17	chr6:31509352-31509402	GM12891	blood:	n/a
18	chr6:31509352-31509402	HPAEpiC	pulmonary alveolar:	n/a
19	chr6:31509352-31509402	GM12878	blood:	n/a
20	chr6:31509352-31509402	GM06990	blood:	n/a
21	chr6:31509352-31509402	GM19239	blood:	n/a
22	chr6:31509352-31509402	Hela-S3	cervix:	n/a
23	chr6:31509352-31509402	SAEC	small airway:	n/a
24	chr6:31509352-31509402	HEK293	kidney:	embryo
25	chr6:31509352-31509402	HCPEpiC	choroid plexus:	n/a
26	chr6:31509352-31509402	HEEpiC	esophagus:	n/a
27	chr6:31509352-31509402	PANC-1	pancreas:	n/a
28	chr6:31509352-31509402	BE2_C	brain:	n/a
29	chr6:31509352-31509402	H1-hESC	embryonic stem cell:	embryo
30	chr6:31509352-31509402	ovcar-3	ovarian:	n/a
31	chr6:31509352-31509402	HAEpiC	amniotic membrane:	n/a
32	chr6:31509352-31509402	Caco-2	colon:	n/a
33	chr6:31509352-31509402	U87	brain:	n/a
34	chr6:31509352-31509402	NH-A	brain:	n/a
35	chr6:31509352-31509402	AoSMC	blood vessel:	n/a
36	chr6:31509352-31509402	HCF	heart:	n/a
37	chr6:31509352-31509402	PrEC	prostate:	n/a
38	chr6:31509352-31509402	HepG2	liver:	n/a
39	chr6:31509352-31509402	Jurkat	blood:	n/a
40	chr6:31509352-31509402	CMK	blood:	n/a
41	chr6:31509352-31509402	RPTEC	kidney:	n/a
42	chr6:31509352-31509402	SK-N-SH	brain:	n/a
43	chr6:31509352-31509402	NHDF-neo	bronchial:	n/a
44	chr6:31509352-31509402	HCT-116	colon:	n/a
45	chr6:31509352-31509402	LNCaP	prostate:	n/a
46	chr6:31509352-31509402	HUVEC	blood vessel:	n/a
47	chr6:31509352-31509402	MCF10A-Er-Src	breast:	n/a
48	chr6:31509352-31509402	SK-N-SH_RA	brain:	n/a
49	chr6:31509352-31509402	ProgFib	skin:	n/a
50	chr6:31509352-31509402	T-47D	breast:	n/a

(count:50 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31508088..31512302-chr6:31792582..31797881,5	K562	blood:
2	chr6:31508602..31511012-chr6:31803135..31806104,3	K562	blood:
3	chr6:31507549..31510479-chr6:31669713..31671247,2	MCF-7	breast:
4	chr6:31508752..31512657-chr6:31701865..31705930,6	K562	blood:
5	chr6:31507082..31511713-chr6:31583957..31591905,17	MCF-7	breast:
6	chr6:31506561..31512642-chr6:31697539..31702106,5	K562	blood:
7	chr6:31507867..31510784-chr6:31781026..31784406,3	MCF-7	breast:
8	chr6:31507451..31516055-chr6:31617949..31624791,11	MCF-7	breast:
9	chr3:48754255..48755080-chr6:31509286..31510239,2	Hela-S3	cervix:
10	chr6:31508352..31511076-chr6:31794765..31796870,2	MCF-7	breast:
11	chr6:31506496..31512275-chr6:31630248..31634828,11	K562	blood:
12	chr6:31459710..31467567-chr6:31506191..31511027,18	MCF-7	breast:
13	chr6:31368721..31370487-chr6:31508420..31510652,2	K562	blood:
14	chr6:31508667..31511581-chr6:31742885..31745171,3	MCF-7	breast:
15	chr6:31508285..31510798-chr6:31940056..31942252,2	K562	blood:
16	chr6:31509002..31510673-chr6:31830602..31832330,2	K562	blood:
17	chr6:31508080..31511338-chr6:31773122..31775825,3	K562	blood:
18	chr6:31506740..31512488-chr6:31586502..31592966,30	K562	blood:
19	chr6:31509079..31511785-chr6:31559160..31560764,2	MCF-7	breast:
20	chr6:31508345..31511059-chr6:31794031..31797026,5	K562	blood:
21	chr6:26157922..26158506-chr6:31508814..31509806,2	NB4	blood:
22	chr6:31508732..31511014-chr6:31781931..31784408,2	K562	blood:
23	chr6:31507082..31510843-chr6:31599707..31603450,4	K562	blood:
24	chr6:31506595..31512441-chr6:31585525..31590767,30	K562	blood:
25	chr6:31508417..31511292-chr6:31625631..31629953,4	K562	blood:
26	chr6:31508578..31511041-chr6:31743489..31745514,2	K562	blood:
27	chr6:31465292..31466331-chr6:31508544..31510586,5	MCF-7	breast:
28	chr5:40833974..40834885-chr6:31508984..31509608,2	Hela-S3	cervix:
29	chr21:38070997..38071747-chr6:31509032..31509863,2	Hela-S3	cervix:
30	chr6:31509091..31511742-chr6:31868193..31871571,3	MCF-7	breast:
31	chr6:31507205..31511686-chr6:31618024..31622039,13	K562	blood:
32	chr6:31458384..31468965-chr6:31503613..31512721,28	K562	blood:
33	chr6:31507998..31511841-chr6:31541735..31545245,5	MCF-7	breast:
34	chr6:31508169..31513281-chr6:31547465..31550370,6	K562	blood:
35	chr6:31507710..31510101-chr6:31604073..31606097,3	K562	blood:
36	chr6:31508286..31510817-chr6:31550087..31552108,2	K562	blood:
37	chr6:31507406..31516955-chr6:31615847..31623354,26	K562	blood:
38	chr6:31507927..31511187-chr6:31633283..31638231,4	MCF-7	breast:
39	chr6:31505350..31512312-chr6:31630543..31635379,11	K562	blood:
40	chr6:31506029..31511048-chr6:31626239..31630287,7	MCF-7	breast:
41	chr6:31507058..31511692-chr6:31586700..31590601,11	MCF-7	breast:
42	chr6:31462628..31467072-chr6:31508179..31511597,8	MCF-7	breast:
43	chr6:31368987..31371166-chr6:31508549..31510652,2	K562	blood:
44	chr6:31508700..31511164-chr6:32162690..32164850,2	K562	blood:
45	chr17:42766653..42767465-chr6:31509314..31509926,2	Hela-S3	cervix:
46	chr6:31460486..31468205-chr6:31503942..31512721,23	K562	blood:
47	chr17:7475862..7476374-chr6:31509215..31509819,2	Hela-S3	cervix:
48	chr6:31504619..31510971-chr6:31539361..31543067,6	K562	blood:
49	chr6:31508386..31510621-chr6:32096687..32099353,2	K562	blood:
50	chr6:31507944..31511146-chr6:31743964..31746169,3	K562	blood:

No data

Variant related genes	Relation type
DDX39B	TF binding region
DDX39B-AS1	TF binding region
SNORD84	TF binding region
SNORD84	CpG island
DDX39B-AS1	CpG island
DDX39B	CpG island
ENSG00000204444	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000204366	Chromatin interaction
ENSG00000201680	Chromatin interaction
ENSG00000213654	Chromatin interaction
ENSG00000204301	Chromatin interaction
ENSG00000204390	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000180329	Chromatin interaction
ENSG00000201207	Chromatin interaction
ENSG00000201754	Chromatin interaction
ENSG00000204388	Chromatin interaction
ENSG00000204439	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000204475	Chromatin interaction
ENSG00000204516	Chromatin interaction
ENSG00000166278	Chromatin interaction
ENSG00000204389	Chromatin interaction
ENSG00000227507	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000161960	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000068745	Chromatin interaction
ENSG00000199332	Chromatin interaction
ENSG00000226979	Chromatin interaction
ENSG00000213722	Chromatin interaction
ENSG00000204315	Chromatin interaction
ENSG00000200816	Chromatin interaction
ENSG00000227198	Chromatin interaction
ENSG00000213719	Chromatin interaction
ENSG00000204463	Chromatin interaction
ENSG00000159263	Chromatin interaction
ENSG00000232810	Chromatin interaction
ENSG00000204387	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000204396	Chromatin interaction
ENSG00000204392	Chromatin interaction
ENSG00000240053	Chromatin interaction
ENSG00000204427	Chromatin interaction
ENSG00000204469	Chromatin interaction
ENSG00000145592	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1055388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2075580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2075582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2239525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2239526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2523504	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2857605	0.94[ASN][1000 genomes]
rs3130055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs933208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
2	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
3	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
4	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
5	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
6	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
7	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
8	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
9	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
10	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
11	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
12	nsv1018463	chr6:31337336-31525275	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
13	nsv538189	chr6:31337336-31525275	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
14	nsv432868	chr6:31338844-31721033	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
15	esv2757162	chr6:31353329-31542308	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
16	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
17	nsv432877	chr6:31412961-31528690	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
18	nsv830627	chr6:31496214-31659950	Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
19	nsv470809	chr6:31496915-31544189	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	76 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2523507	HLA-C	cis	lymphoblastoid	GTEx
rs2523507	HIST1H1B	cis	cerebellum	SCAN
rs2523507	HLA-DRB5	cis	lymphoblastoid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31506200-31509400	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr6:31506600-31510400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:31506800-31509400	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
4	chr6:31507600-31510800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:31507800-31510600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:31508000-31509400	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr6:31508000-31510200	Active TSS	Fetal Brain Female	brain
8	chr6:31508000-31510800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr6:31508000-31511600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:31508200-31509600	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr6:31508200-31510200	Active TSS	NH-A	brain
12	chr6:31508200-31510800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:31508200-31511000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:31508200-31511000	Active TSS	NHLF	lung
15	chr6:31508200-31511400	Active TSS	GM12878-XiMat	blood
16	chr6:31508400-31509400	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr6:31508400-31509400	Active TSS	Right Atrium	heart
18	chr6:31508400-31510400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:31508400-31510400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:31508400-31510400	Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr6:31508400-31510400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:31508400-31510400	Active TSS	Fetal Heart	heart
23	chr6:31508400-31510400	Active TSS	Fetal Stomach	stomach
24	chr6:31508400-31510400	Active TSS	Pancreas	Pancrea
25	chr6:31508400-31510400	Active TSS	HSMM	muscle
26	chr6:31508400-31510600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr6:31508400-31510600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:31508400-31510600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:31508400-31510600	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr6:31508400-31510600	Active TSS	Esophagus	oesophagus
31	chr6:31508400-31510600	Active TSS	Fetal Kidney	kidney
32	chr6:31508400-31510600	Active TSS	Fetal Lung	lung
33	chr6:31508400-31510600	Active TSS	Gastric	stomach
34	chr6:31508400-31510600	Active TSS	Lung	lung
35	chr6:31508400-31510600	Active TSS	Ovary	ovary
36	chr6:31508400-31510800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:31508400-31510800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:31508400-31510800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:31508400-31510800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:31508400-31510800	Active TSS	Right Ventricle	heart
41	chr6:31508400-31510800	Active TSS	HMEC	breast
42	chr6:31508400-31510800	Active TSS	NHDF-Ad	bronchial
43	chr6:31508400-31511000	Active TSS	H1 Cell Line	embryonic stem cell
44	chr6:31508400-31511000	Active TSS	H9 Cell Line	embryonic stem cell
45	chr6:31508400-31511000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:31508400-31511000	Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr6:31508400-31511000	Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr6:31508400-31511000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:31508400-31511000	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr6:31508400-31511000	Active TSS	Left Ventricle	heart

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