Variant report

Variant	rs2524204
Chromosome Location	chr6:30359697-30359698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2032134	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2040450	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2251765	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2516683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2516684	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2524202	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2524203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv969293	chr6:30348821-30368580	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv18372	chr6:30359622-30363319	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30359000-30359800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:30359000-30359800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:30359000-30359800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:30359200-30359800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:30359200-30359800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:30359200-30359800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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