Variant report

Variant	rs2524947
Chromosome Location	chr7:85551781-85551782
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10499895	0.83[ASN][1000 genomes]
rs10808063	0.82[ASN][1000 genomes]
rs10808064	0.82[ASN][1000 genomes]
rs10808065	0.82[ASN][1000 genomes]
rs10952862	0.82[ASN][1000 genomes]
rs12530636	0.83[ASN][1000 genomes]
rs12530752	0.82[ASN][1000 genomes]
rs12535825	0.83[ASN][1000 genomes]
rs12535967	0.82[ASN][1000 genomes]
rs12704182	0.83[ASN][1000 genomes]
rs12704183	0.83[ASN][1000 genomes]
rs12704184	0.82[ASN][1000 genomes]
rs12704185	0.82[ASN][1000 genomes]
rs12704186	0.82[ASN][1000 genomes]
rs12704187	0.82[ASN][1000 genomes]
rs12704188	0.82[ASN][1000 genomes]
rs1396587	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2524943	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2524944	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2524945	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2524946	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2662875	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2662883	0.81[ASN][1000 genomes]
rs2726005	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4513905	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4541830	0.82[ASN][1000 genomes]
rs4559170	0.83[ASN][1000 genomes]
rs4560725	0.82[ASN][1000 genomes]
rs4613919	0.82[ASN][1000 genomes]
rs4615498	0.82[ASN][1000 genomes]
rs6953586	0.83[ASN][1000 genomes]
rs6954128	0.81[ASN][1000 genomes]
rs6971388	0.83[ASN][1000 genomes]
rs6971791	0.83[ASN][1000 genomes]
rs6979503	0.82[ASN][1000 genomes]
rs7784695	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888655	chr7:85178080-85566769	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv888665	chr7:85194414-85582101	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv888671	chr7:85343307-85570519	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518741	chr7:85381614-85570519	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv888673	chr7:85383292-85582101	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2756000	chr7:85418831-85560269	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv428176	chr7:85447360-85646560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1802328	chr7:85545844-85558238	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1031450	chr7:85547679-85583028	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:85549600-85556800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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